raphael-group / decifer

DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF).
BSD 3-Clause "New" or "Revised" License
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debugged create_input.ipynb #1

Closed brian-arnold closed 3 years ago

brian-arnold commented 3 years ago

There is one optional fix here. I noticed that samples are renamed according to the last element in the string. This is fine if samples are indexed such that they end a unique integer/letter, but this created problems for a dataset I was working with. In this PR, samples are instead labeled according to their full, original name.