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raphael-group / hatchet

HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.
BSD 3-Clause "New" or "Revised" License
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Small bug fixes for edge cases #207

Closed mmyers1 closed 6 months ago

mmyers1 commented 8 months ago

fixes to edge cases of haplotype switch correction, including the case in which there are fewer bins on the chromosome arm than the number of segments that we're looking for

codecov-commenter commented 7 months ago

Codecov Report

Attention: Patch coverage is 0% with 10 lines in your changes are missing coverage. Please review.

Project coverage is 51.50%. Comparing base (369979c) to head (a2b50d9). Report is 2 commits behind head on master.

Files Patch % Lines
src/hatchet/utils/combine_counts.py 0.00% 10 Missing :warning:

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #207 +/- ## ========================================== - Coverage 51.58% 51.50% -0.09% ========================================== Files 35 35 Lines 6998 7023 +25 ========================================== + Hits 3610 3617 +7 - Misses 3388 3406 +18 ```

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