Error in findThreshold mutations

[jamesrpriest]

Getting a complaint about an unreferenced local variable when I run findThreshold mutations with the following input;

findThreshold.py mutations -r MAF0.1.CADD0.mutations.iref -if /home/storage/jpriest_backup/zoran/priest_apps/hotnet2-master/influence_matrices/irefindex/index_genes_uniform -hf ./MAF0.1.CADD0.heat -n 5 -c 16 -o ./MAF0.1.CADD0.iref.deltas.mutation -mf /home/storage/jpriest_backup/zoran/priest_apps/hotnet2-master/influence_matrices/irefindex/iref_ppr_0.55.mat -glf refflat.glf -gof refflat.gof -b 0.003 --bmr_file corr.bmr.MAF0.1.CADD0.combined.bmr

• Performing permuted mutation data delta selection... Traceback (most recent call last): File "/home/storage/jpriest_backup/zoran/priest_apps/hotnet2-master/bin/findThreshold.py", line 161, in run(get_parser().parse_args(sys.argv[1:])) File "/home/storage/jpriest_backup/zoran/priest_apps/hotnet2-master/bin/findThreshold.py", line 102, in run deltas = get_deltas_for_mutations(args, infmat, infmat_index, heat_params) File "/home/storage/jpriest_backup/zoran/priest_apps/hotnet2-master/bin/findThreshold.py", line 147, in get_deltas_for_mutations heat_params["min_freq"], args.num_permutations, args.num_cores) File "/home/storage/jpriest_backup/zoran/priest_apps/hotnet2-master/hotnet2/permutations.py", line 117, in generate_mutation_permutation_heat genes = set([snv.gene for snv in snvs] + [cna.gene for cna in cnas]) UnboundLocalError: local variable 'snvs' referenced before assignment

[matthewreyna]

This issue should be fixed in the current version of the code.