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raphael-group / multibreak-sv

MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combination of sequencing platforms.
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Questions about the result of structural variant #10

Open gn01786955 opened 7 years ago

gn01786955 commented 7 years ago

hi , guys I am analysising structural variant with a bacterial genome if the cluster must be at least two of the read with the same structural variant , then we will analysis the structural variant in the cluster the one of NumPairs should be filtered by the multibreak-sv why the result had NumPairs ?

Thank you for your help

The following are the a part of the result

#ClusterID  SVFreq  AvgAssign   SVType  StartChr    StartLocRange   EndChr  EndLocRange NumPairs
c1571   0   0   I+  17  571687-573687   17  3081129-3083129 1
c5497   0   0   D   17  2324808-2326808 17  3076051-3078051 1
c2143   0   0   D   17  805250-807250   17  3156296-3158296 1
c2145   0   0   V   17  791259-793259   17  3733815-3735815 1
c1570   0   0   I+  17  571713-573713   17  3039406-3041406 1
c3430   0   0   V   17  1415004-1417004 17  2262515-2264515 1
c3435   0   0   V   17  1411835-1413835 17  4087865-4089865 1
c703    0   0   I+  17  277561-279561   17  1237067-1239067 1
c701    0   0   I-  17  271737-273737   17  976163-978163   1
c6579   0   0   I+  17  3284401-3287401 17  4087884-4090884 1
c7393   0   0   TN-2    17  2080574-2082574 18  32535-34535 1
c7392   0   0   TN+1    17  2057897-2059897 18  20332-22332 1

The following are configured of the parameter

--binsize=1000
 --numiterations 100000 
--savespace 
--perr 0.001