rapidsai / cudf

cuDF - GPU DataFrame Library
https://docs.rapids.ai/api/cudf/stable/
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[BUG] Cumulative aggregation functions fail on dataframe/series groupbys with nulls #12055

Closed charlesbluca closed 1 year ago

charlesbluca commented 2 years ago

Describe the bug When attempting to use the cumulative aggregation functions on a groupby of a frame or series with nulls (i.e. df.groupby("x").cumsum()), we get a ValueError.

Steps/Code to reproduce bug Note we would see the same traceback if we used cumcount, cummax, or cummin:

import cudf
import cupy as cp

gdf = cudf.DataFrame(
    {
        "xx": cp.random.randint(0, 5, size=10000),
        "x":  cp.random.normal(size=10000),
        "y":  cp.random.normal(size=10000),
    }
)
gdf = gdf.mask(cp.random.choice([True, False], size=gdf.shape))

gdf_grouped = gdf.groupby("xx")

gdf_grouped.cumsum()
gdf_grouped.xx.cumsum()
ValueError                                Traceback (most recent call last)
Cell In [3], line 16
     11 gdf = gdf.mask(cp.random.choice([True, False], size=gdf.shape))
     13 gdf_grouped = gdf.groupby("xx")
---> 16 gdf_grouped.xx.cumsum()
     17 gdf_grouped.cumcount()
     18 gdf_grouped.cummax()

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/site-packages/cudf/core/mixins/mixin_factory.py:11, in _partialmethod.<locals>.wrapper(self, *args2, **kwargs2)
     10 def wrapper(self, *args2, **kwargs2):
---> 11     return method(self, *args1, *args2, **kwargs1, **kwargs2)

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/site-packages/cudf/core/groupby/groupby.py:536, in GroupBy._scan(self, op, *args, **kwargs)
    534 def _scan(self, op: str, *args, **kwargs):
    535     """{op_name} for each group."""
--> 536     return self.agg(op)

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/site-packages/cudf/core/groupby/groupby.py:1749, in SeriesGroupBy.agg(self, func)
   1748 def agg(self, func):
-> 1749     result = super().agg(func)
   1751     # downcast the result to a Series:
   1752     if len(result._data):

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/contextlib.py:79, in ContextDecorator.__call__.<locals>.inner(*args, **kwds)
     76 @wraps(func)
     77 def inner(*args, **kwds):
     78     with self._recreate_cm():
---> 79         return func(*args, **kwds)

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/site-packages/cudf/core/groupby/groupby.py:490, in GroupBy.agg(self, func)
    487     result = result.reset_index()
    488 if libgroupby._is_all_scan_aggregate(normalized_aggs):
    489     # Scan aggregations return rows in original index order
--> 490     return self._mimic_pandas_order(result)
    492 return result

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/site-packages/cudf/core/groupby/groupby.py:1724, in GroupBy._mimic_pandas_order(self, result)
   1722 gather_map = order_cols[0].argsort()
   1723 result = result.take(gather_map)
-> 1724 result.index = self.obj.index
   1725 return result

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/site-packages/cudf/core/dataframe.py:1091, in DataFrame.__setattr__(self, key, col)
   1089     super().__setattr__(key, col)
   1090 else:
-> 1091     super().__setattr__(key, col)

File /raid/charlesb/mambaforge/envs/checkout-groupby-layers/lib/python3.9/site-packages/cudf/core/indexed_frame.py:533, in IndexedFrame.index(self, value)
    531 # A DataFrame with 0 columns can have an index of arbitrary length.
    532 if len(self._data) > 0 and new_length != old_length:
--> 533     raise ValueError(
    534         f"Length mismatch: Expected axis has {old_length} elements, "
    535         f"new values have {len(value)} elements"
    536     )
    537 self._index = Index(value)

ValueError: Length mismatch: Expected axis has 5032 elements, new values have 10000 elements

Expected behavior I would expect these operations to succeed and give me something roughly similar to the output of pandas:

In [2]: gdf.to_pandas().groupby("xx").cumsum()
Out[2]: 
              x          y
0           NaN        NaN
1           NaN        NaN
2           NaN        NaN
3           NaN        NaN
4           NaN        NaN
...         ...        ...
9995  15.674543  13.537169
9996 -22.231675        NaN
9997        NaN -19.599722
9998        NaN        NaN
9999        NaN        NaN

[10000 rows x 2 columns]

Environment overview (please complete the following information)

Environment details

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print_env.sh: 11: [: true: unexpected operator
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     Thu Nov  3 07:06:22 2022       
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     |                               |                      |                  N/A |
     +-------------------------------+----------------------+----------------------+
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     |                               |                      |                  N/A |
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     | N/A   30C    P0    41W / 300W |      0MiB / 32768MiB |      0%      Default |
     |                               |                      |                  N/A |
     +-------------------------------+----------------------+----------------------+
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     |                               |                      |                  N/A |
     +-------------------------------+----------------------+----------------------+
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     | N/A   29C    P0    41W / 300W |      0MiB / 32768MiB |      0%      Default |
     |                               |                      |                  N/A |
     +-------------------------------+----------------------+----------------------+

     +-----------------------------------------------------------------------------+
     | Processes:                                                                  |
     |  GPU   GI   CI        PID   Type   Process name                  GPU Memory |
     |        ID   ID                                                   Usage      |
     |=============================================================================|
     |  No running processes found                                                 |
     +-----------------------------------------------------------------------------+

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     ***CMake***
     /raid/charlesb/mambaforge/envs/checkout-groupby-layers/bin/cmake
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     /raid/charlesb/mambaforge/envs/checkout-groupby-layers/bin/g++
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     Copyright (C) 2019 Free Software Foundation, Inc.
     This is free software; see the source for copying conditions.  There is NO
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     ***nvcc***
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     nvcc: NVIDIA (R) Cuda compiler driver
     Copyright (c) 2005-2021 NVIDIA Corporation
     Built on Thu_Nov_18_09:45:30_PST_2021
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     /raid/charlesb/mambaforge/envs/checkout-groupby-layers/bin/python
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     jsonpatch                 1.32               pyhd8ed1ab_0    conda-forge
     jsonpickle                2.2.0              pyhd8ed1ab_0    conda-forge
     jsonpointer               2.0                        py_0    conda-forge
     jsonschema                3.2.0              pyhd8ed1ab_3    conda-forge
     junit-xml                 1.9                pyh9f0ad1d_0    conda-forge
     jupyter-cache             0.5.0              pyhd8ed1ab_0    conda-forge
     jupyter_client            7.3.4              pyhd8ed1ab_0    conda-forge
     jupyter_core              4.11.1           py39hf3d152e_1    conda-forge
     jupyter_server            1.21.0             pyhd8ed1ab_0    conda-forge
     jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
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     keyutils                  1.6.1                h166bdaf_0    conda-forge
     krb5                      1.19.3               h3790be6_0    conda-forge
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     ld_impl_linux-64          2.39                 hc81fddc_0    conda-forge
     lerc                      4.0.0                h27087fc_0    conda-forge
     libabseil                 20211102.0      cxx17_h48a1fff_3    conda-forge
     libblas                   3.9.0            16_linux64_mkl    conda-forge
     libbrotlicommon           1.0.9                h166bdaf_8    conda-forge
     libbrotlidec              1.0.9                h166bdaf_8    conda-forge
     libbrotlienc              1.0.9                h166bdaf_8    conda-forge
     libcblas                  3.9.0            16_linux64_mkl    conda-forge
     libclang-cpp11.1          11.1.0          default_ha53f305_1    conda-forge
     libcrc32c                 1.1.2                h9c3ff4c_0    conda-forge
     libcudf                   22.12.00a221102 cuda11_g5ace809af6_207    rapidsai-nightly
     libcurl                   7.86.0               h7bff187_1    conda-forge
     libdeflate                1.14                 h166bdaf_0    conda-forge
     libedit                   3.1.20191231         he28a2e2_2    conda-forge
     libev                     4.33                 h516909a_1    conda-forge
     libevent                  2.1.10               h9b69904_4    conda-forge
     libffi                    3.4.2                h7f98852_5    conda-forge
     libgcc-devel_linux-64     9.5.0               h0a57e50_19    conda-forge
     libgcc-ng                 12.2.0              h65d4601_19    conda-forge
     libgcrypt                 1.10.1               h166bdaf_0    conda-forge
     libgfortran-ng            12.2.0              h69a702a_19    conda-forge
     libgfortran5              12.2.0              h337968e_19    conda-forge
     libgomp                   12.2.0              h65d4601_19    conda-forge
     libgoogle-cloud           1.40.2               hefc27d0_0    conda-forge
     libgpg-error              1.45                 hc0c96e0_0    conda-forge
     libgsasl                  1.10.0               h5b4c23d_0    conda-forge
     libiconv                  1.17                 h166bdaf_0    conda-forge
     liblapack                 3.9.0            16_linux64_mkl    conda-forge
     libllvm11                 11.1.0               he0ac6c6_5    conda-forge
     libnghttp2                1.47.0               hdcd2b5c_1    conda-forge
     libnsl                    2.0.0                h7f98852_0    conda-forge
     libntlm                   1.4               h7f98852_1002    conda-forge
     libpng                    1.6.38               h753d276_0    conda-forge
     libprotobuf               3.20.1               h6239696_4    conda-forge
     librdkafka                1.7.0                hc49e61c_1    conda-forge
     librmm                    22.12.00a221102 cuda11_gc1af31ff_49    rapidsai-nightly
     libsanitizer              9.5.0               h2f262e1_19    conda-forge
     libsodium                 1.0.18               h36c2ea0_1    conda-forge
     libsqlite                 3.39.4               h753d276_0    conda-forge
     libssh2                   1.10.0               haa6b8db_3    conda-forge
     libstdcxx-devel_linux-64  9.5.0               h0a57e50_19    conda-forge
     libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
     libthrift                 0.16.0               h491838f_2    conda-forge
     libtiff                   4.4.0                h55922b4_4    conda-forge
     libutf8proc               2.8.0                h166bdaf_0    conda-forge
     libuuid                   2.32.1            h7f98852_1000    conda-forge
     libuv                     1.44.2               h166bdaf_0    conda-forge
     libwebp-base              1.2.4                h166bdaf_0    conda-forge
     libxcb                    1.13              h7f98852_1004    conda-forge
     libzlib                   1.2.13               h166bdaf_4    conda-forge
     livereload                2.6.3              pyh9f0ad1d_0    conda-forge
     llvm-openmp               14.0.4               he0ac6c6_0    conda-forge
     llvmlite                  0.39.1           py39h7d9a04d_1    conda-forge
     locket                    1.0.0              pyhd8ed1ab_0    conda-forge
     lz4                       4.0.2            py39h029007f_0    conda-forge
     lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
     magma                     2.5.4                hc72dce7_4    conda-forge
     make                      4.3                  hd18ef5c_1    conda-forge
     makefun                   1.15.0             pyhd8ed1ab_0    conda-forge
     markdown                  3.4.1              pyhd8ed1ab_0    conda-forge
     markdown-it-py            2.1.0              pyhd8ed1ab_0    conda-forge
     markupsafe                2.1.1            py39hb9d737c_2    conda-forge
     matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
     mdit-py-plugins           0.3.1              pyhd8ed1ab_0    conda-forge
     mdurl                     0.1.0              pyhd8ed1ab_0    conda-forge
     mimesis                   6.1.1              pyhd8ed1ab_0    conda-forge
     mistune                   2.0.4              pyhd8ed1ab_0    conda-forge
     mkl                       2022.1.0           h84fe81f_915    conda-forge
     moto                      4.0.9              pyhd8ed1ab_0    conda-forge
     mpc                       1.2.1                h9f54685_0    conda-forge
     mpfr                      4.1.0                h9202a9a_1    conda-forge
     msgpack-python            1.0.4            py39hf939315_1    conda-forge
     multidict                 6.0.2            py39hb9d737c_2    conda-forge
     myst-nb                   0.17.1             pyhd8ed1ab_0    conda-forge
     myst-parser               0.18.1             pyhd8ed1ab_0    conda-forge
     nbclassic                 0.4.5              pyhd8ed1ab_0    conda-forge
     nbclient                  0.5.13             pyhd8ed1ab_0    conda-forge
     nbconvert                 7.2.3              pyhd8ed1ab_0    conda-forge
     nbconvert-core            7.2.3              pyhd8ed1ab_0    conda-forge
     nbconvert-pandoc          7.2.3              pyhd8ed1ab_0    conda-forge
     nbformat                  5.7.0              pyhd8ed1ab_0    conda-forge
     nbsphinx                  0.8.9              pyhd8ed1ab_0    conda-forge
     nccl                      2.14.3.1             h0800d71_0    conda-forge
     ncurses                   6.3                  h27087fc_1    conda-forge
     nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
     networkx                  2.8.8              pyhd8ed1ab_0    conda-forge
     ninja                     1.11.0               h924138e_0    conda-forge
     nodeenv                   1.7.0              pyhd8ed1ab_0    conda-forge
     notebook                  6.5.1              pyha770c72_0    conda-forge
     notebook-shim             0.2.0              pyhd8ed1ab_0    conda-forge
     numba                     0.56.3           py39h61ddf18_0    conda-forge
     numpy                     1.23.4           py39h3d75532_1    conda-forge
     numpydoc                  1.5.0              pyhd8ed1ab_0    conda-forge
     nvcc_linux-64             11.5                h44f499b_21    conda-forge
     nvtx                      0.2.3            py39hb9d737c_2    conda-forge
     openapi-schema-validator  0.2.3              pyhd8ed1ab_0    conda-forge
     openapi-spec-validator    0.4.0              pyhd8ed1ab_1    conda-forge
     openjpeg                  2.5.0                h7d73246_1    conda-forge
     openssl                   1.1.1s               h166bdaf_0    conda-forge
     orc                       1.7.5                h6c59b99_0    conda-forge
     packaging                 21.3               pyhd8ed1ab_0    conda-forge
     pandas                    1.5.1            py39h4661b88_1    conda-forge
     pandoc                    1.19.2                        0    conda-forge
     pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
     paramiko                  2.11.0             pyhd8ed1ab_0    conda-forge
     parquet-cpp               1.5.1                         2    conda-forge
     parso                     0.8.3              pyhd8ed1ab_0    conda-forge
     partd                     1.3.0              pyhd8ed1ab_0    conda-forge
     pbr                       5.11.0             pyhd8ed1ab_0    conda-forge
     pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
     pickleshare               0.7.5                   py_1003    conda-forge
     pillow                    9.2.0            py39hf3a2cdf_3    conda-forge
     pip                       22.3               pyhd8ed1ab_0    conda-forge
     platformdirs              2.5.2              pyhd8ed1ab_1    conda-forge
     pluggy                    1.0.0              pyhd8ed1ab_5    conda-forge
     pre-commit                2.20.0           py39hf3d152e_1    conda-forge
     prometheus_client         0.15.0             pyhd8ed1ab_0    conda-forge
     prompt-toolkit            3.0.31             pyha770c72_0    conda-forge
     protobuf                  3.20.1           py39h5a03fae_0    conda-forge
     psutil                    5.9.3            py39hb9d737c_1    conda-forge
     pthread-stubs             0.4               h36c2ea0_1001    conda-forge
     ptxcompiler               0.7.0            py39h1eff087_2    conda-forge
     ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
     pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
     py-cpuinfo                9.0.0              pyhd8ed1ab_0    conda-forge
     pyarrow                   9.0.0           py39h58137f1_1_cpu    conda-forge
     pyasn1                    0.4.8                      py_0    conda-forge
     pycparser                 2.21               pyhd8ed1ab_0    conda-forge
     pydata-sphinx-theme       0.11.0             pyhd8ed1ab_1    conda-forge
     pygments                  2.13.0             pyhd8ed1ab_0    conda-forge
     pynacl                    1.5.0            py39hb9d737c_2    conda-forge
     pynvml                    11.4.1             pyhd8ed1ab_0    conda-forge
     pyopenssl                 22.1.0             pyhd8ed1ab_0    conda-forge
     pyorc                     0.7.0            py39h3720fd5_0    conda-forge
     pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
     pyrsistent                0.19.1           py39hb9d737c_0    conda-forge
     pysocks                   1.7.1              pyha2e5f31_6    conda-forge
     pytest                    7.2.0              pyhd8ed1ab_2    conda-forge
     pytest-benchmark          4.0.0              pyhd8ed1ab_0    conda-forge
     pytest-cases              3.6.13             pyhd8ed1ab_0    conda-forge
     pytest-xdist              3.0.2              pyhd8ed1ab_0    conda-forge
     python                    3.9.13          h9a8a25e_0_cpython    conda-forge
     python-confluent-kafka    1.7.0            py39h3811e60_2    conda-forge
     python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
     python-fastjsonschema     2.16.2             pyhd8ed1ab_0    conda-forge
     python-jose               3.3.0              pyh6c4a22f_1    conda-forge
     python-snappy             0.6.0            py39he8e2bb5_2    conda-forge
     python_abi                3.9                      2_cp39    conda-forge
     pytorch                   1.11.0          cuda112py39ha0cca9b_202    conda-forge
     pytz                      2022.6             pyhd8ed1ab_0    conda-forge
     pywin32-on-windows        0.1.0              pyh1179c8e_3    conda-forge
     pyyaml                    6.0              py39hb9d737c_5    conda-forge
     pyzmq                     24.0.1           py39headdf64_1    conda-forge
     rapidjson                 1.1.0             he1b5a44_1002    conda-forge
     re2                       2022.06.01           h27087fc_0    conda-forge
     readline                  8.1.2                h0f457ee_0    conda-forge
     recommonmark              0.7.1              pyhd8ed1ab_0    conda-forge
     regex                     2022.10.31       py39hb9d737c_0    conda-forge
     requests                  2.28.1             pyhd8ed1ab_1    conda-forge
     responses                 0.21.0             pyhd8ed1ab_0    conda-forge
     rhash                     1.4.3                h166bdaf_0    conda-forge
     rmm                       22.12.00a221102 cuda11_py39_gc1af31ff_49    rapidsai-nightly
     rsa                       4.9                pyhd8ed1ab_0    conda-forge
     s2n                       1.0.10               h9b69904_0    conda-forge
     s3fs                      2022.10.0          pyhd8ed1ab_0    conda-forge
     s3transfer                0.6.0              pyhd8ed1ab_0    conda-forge
     sacremoses                0.0.53             pyhd8ed1ab_0    conda-forge
     sarif-om                  1.0.4              pyhd8ed1ab_0    conda-forge
     scikit-build              0.16.1             pyhb871ab6_0    conda-forge
     scipy                     1.9.3            py39hddc5342_1    conda-forge
     sed                       4.8                  he412f7d_0    conda-forge
     send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
     setuptools                65.5.0             pyhd8ed1ab_0    conda-forge
     six                       1.16.0             pyh6c4a22f_0    conda-forge
     sleef                     3.5.1                h9b69904_2    conda-forge
     snappy                    1.1.9                hbd366e4_1    conda-forge
     sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
     snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
     sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
     soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
     spdlog                    1.8.5                h4bd325d_1    conda-forge
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     sphinx-autobuild          2021.3.14          pyhd8ed1ab_0    conda-forge
     sphinx-copybutton         0.5.0              pyhd8ed1ab_0    conda-forge
     sphinx-markdown-tables    0.0.17             pyh6c4a22f_0    conda-forge
     sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
     sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
     sphinxcontrib-htmlhelp    2.0.0              pyhd8ed1ab_0    conda-forge
     sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
     sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
     sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_2    conda-forge
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     sshpubkeys                3.3.1              pyhd8ed1ab_0    conda-forge
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     streamz                   0.6.4              pyh6c4a22f_0    conda-forge
     sysroot_linux-64          2.17                h4a8ded7_13    conda-forge
     tabulate                  0.9.0              pyhd8ed1ab_1    conda-forge
     tbb                       2021.6.0             h924138e_1    conda-forge
     tblib                     1.7.0              pyhd8ed1ab_0    conda-forge
     terminado                 0.17.0             pyh41d4057_0    conda-forge
     tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
     tk                        8.6.12               h27826a3_0    conda-forge
     tokenizers                0.10.3           py39hd6d55de_1    conda-forge
     toml                      0.10.2             pyhd8ed1ab_0    conda-forge
     tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
     toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
     tornado                   6.1              py39hb9d737c_3    conda-forge
     tqdm                      4.64.1             pyhd8ed1ab_0    conda-forge
     traitlets                 5.5.0              pyhd8ed1ab_0    conda-forge
     transformers              4.10.3             pyhd8ed1ab_0    conda-forge
     typing-extensions         4.4.0                hd8ed1ab_0    conda-forge
     typing_extensions         4.4.0              pyha770c72_0    conda-forge
     tzdata                    2022f                h191b570_0    conda-forge
     ukkonen                   1.0.1            py39hf939315_3    conda-forge
     urllib3                   1.26.11            pyhd8ed1ab_0    conda-forge
     virtualenv                20.16.5          py39hf3d152e_1    conda-forge
     wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
     webencodings              0.5.1                      py_1    conda-forge
     websocket-client          1.4.1              pyhd8ed1ab_0    conda-forge
     werkzeug                  2.1.2              pyhd8ed1ab_1    conda-forge
     wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
     wrapt                     1.14.1           py39hb9d737c_1    conda-forge
     xmltodict                 0.13.0             pyhd8ed1ab_0    conda-forge
     xorg-libxau               1.0.9                h7f98852_0    conda-forge
     xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
     xz                        5.2.6                h166bdaf_0    conda-forge
     yaml                      0.2.5                h7f98852_2    conda-forge
     yarl                      1.8.1            py39hb9d737c_0    conda-forge
     zeromq                    4.3.4                h9c3ff4c_1    conda-forge
     zict                      2.2.0              pyhd8ed1ab_0    conda-forge
     zipp                      3.10.0             pyhd8ed1ab_0    conda-forge
     zlib                      1.2.13               h166bdaf_4    conda-forge
     zstd                      1.5.2                h6239696_4    conda-forge

Additional context Ran into this issue while adding null testing to dask-cudf's groupby tests in https://github.com/rapidsai/cudf/pull/10853.

wence- commented 1 year ago

See discussion in #13349