rapodaca / dialect

Documenting a subset of the SMILES language.
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Avoiding normative SMILES #85

Closed rapodaca closed 2 years ago

rapodaca commented 2 years ago

The way in which Compatibility defines "SMILES" may imply normativity to some readers. Consider this thread.

Ways to avoid this misperception:

  1. Use a name different from SMILES. For example add a descriptive prefix to the term SMILES. Or come up with something else altogether. Possibilities include:
    • "ProtoSMILES"
  2. Explicitly state that the definition is for comparison purposes only.
  3. Re-iterate the difficulty (or even impossibility) of defining "SMILES" today.
  4. Re-emphasize that the definition says nothing about existing software implementations, which are explicitly disregarded.
  5. Bring in some citations acknowledging the various kinds of SMILES, like this one.
  6. Re-iterate that the purpose of the paper is not to define SMILES, but a fully-specified language the works like it.

(1) by itself may do the job.