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rargelaguet / mouse_organogenesis_10x_multiome_publication

Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
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Questions about the 10x multiomic data with CRISP tech #5

Closed HelloWorldLTY closed 8 months ago

HelloWorldLTY commented 8 months ago

Hi, thanks for your great work. I am checking the processed data shared in your github website. I think the perturbed data are sequenced based on 10x multiome tech, thus we should see paired data.

However, it seems that for the cells with KO condition, the number of cells from rna does not match the number of cells from atac: image

Did I miss anything here? Or you seperately processed different dataset? Thanks.