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ratan-lab / mecs

Implementation of method used in Wong et al. for Error corrected DNA sequencing
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Read name format #5

Open aakrosh opened 5 years ago

aakrosh commented 5 years ago

The current version of the code assumes that the read names are in a particular format. We need a check for the format at the onset of the pipeline so that this is not an issue.

aakrosh commented 5 years ago

This is done right now in an adhoc manner. I assume that the UMI is a 16 character string made of ACGTs in the read name.