search

ratschlab / scim

Code for Universal Single-Cell Matching with Unpaired Feature Sets
GNU Lesser General Public License v3.0
20 stars 3 forks source link

demo data missing #5

Closed 5rycaa closed 3 years ago

5rycaa commented 3 years ago

Hi,

I am trying to implement SCIM in order to use it on my own data. I tried to follow your demo notebook, however the path to the demo data doesn't exist. Could you please add that?

I even try to reverse-engineer it with my own data, but then I am still missing information like what type of data is stored in data.obs[is_train]. Thanks for your help!

stefangstark commented 3 years ago

Hi thanks for pointing this out.

For now, you can download the data by running the scripts/download.sh bash script. The README will be updated and a proper makefile will be added.

Stefan

stefangstark commented 3 years ago

oops -- I had confused this with another repo, but the demo notebook generates the data it uses. I was able to install the environment and run the notebook without errors. The data the project uses should be available at the link in the readme, but it looks like this was become projected, which should not have happened.

stefangstark commented 3 years ago

download link has been updated