Open avrajit opened 1 year ago
Dear @avrajit ,
The command as shown just visualizes the alternative event. In your case this is an exon skip. Shown are the inclusion and the exclusion path of the event.
To also add the transcripts annotated for the respective gene (e.g., gene1
), you would need to add --track transcript gene1
to your plotting command. You can find more details on how to use the tracks in the Spladder Documentation.
Best, Andre
Thanks for your response. I tried that way too. I did that with below command spladder viz -o ./ --track transcript SPBC36B7.09
And the Error below.
Traceback (most recent call last):
File "/mypath/anaconda3/envs/spladder/bin/spladder", line 8, in
Description
I made a visualization of my splicing result by using below command
What I Did
spladder viz -o ./ --track event exon_skip.94 gene_overview.pdf
I like to know is this showing comparison between two sample condition(Group A and B)? or is it showing comparison with reference Genome?