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ratschlab / spladder

Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
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gff on gtf #184

Open ntsopoul opened 1 year ago

ntsopoul commented 1 year ago

Hi,

I have aligned files (mouse mm10 genome) aligned with STAR with .gtf files for annotation. Spladder requires .gff files. Can I use the corresponding .gff (same org. same annotation)?

akahles commented 1 year ago

Dear @ntsopoul ,

SplAdder also works with gtf files. So you can provide the same gtf as you used for the alignment.

Best,

Andre