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ratt-ru / tricolour

Holds an offline, MS direct version of the SDP online flagger.
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Support python 3.5 #35

Closed bennahugo closed 5 years ago

bennahugo commented 5 years ago 
hugo@stevie /scratch/bhugo/tricolour_testing                                                                                                                                                                                                                     [10:28:29] 
(venv) > $ tricolour -fs polarisation -sn 94~95 1519747221.subset.ms                                                                                                                                                                                                       
tricolour - 2019-07-03 10:29:03,386 INFO - 
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      ▀       ▀         ▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀         ▀

Viva la révolution!

SARAO END USER LICENSE AGREEMENT

A DASK distributed RFI flagger by Science Data Processing and Radio Astronomy Research Group
Copyright 2019 South African Radio Astronomy Observatory (SARAO, SKA-SA). All rights reserved

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED GRATIS, "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF 
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE 
FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH 
THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. NO PORTION OF THIS SOFTWARE MAY BE REVERSE ENGINEERED OR INCLUDED IN OTHER 
PRODUCTS WITHOUT PRIOR WRITTEN PERMISSION FROM SARAO. THIS SOFTWARE, EITHER IN PORTION OR IN ITS ENTIRETY, MAY NOT BE SOLD OR OTHERWISE 
COMMERCIALLY EXPLOITED BY ANY THIRD PARTY

By using this software you, the end user, agree to these terms and conditions
***********************************************************************************************************************************************

tricolour - 2019-07-03 10:29:03,404 INFO - Flagging on the DATA column
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Looking for static masks...
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Searching /etc/tricolour
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Searching /scratch/bhugo/tricolour_testing/venv/etc/tricolour
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Searching /home/hugo/.config/tricolour
tricolour.mask - 2019-07-03 10:29:03,405 INFO - Searching /home/hugo/.tricolour
tricolour.mask - 2019-07-03 10:29:03,405 INFO - Searching /scratch/bhugo/tricolour_testing/tricolour/tricolour/data
tricolour.mask - 2019-07-03 10:29:03,405 INFO - Found static mask file /scratch/bhugo/tricolour_testing/tricolour/tricolour/data/4k_lband_meerkat.staticmask
tricolour.mask - 2019-07-03 10:29:03,406 INFO - Loaded mask /scratch/bhugo/tricolour_testing/tricolour/tricolour/data/4k_lband_meerkat.staticmask (non-dilated) with 41.50% flagged bandwidth between 0.856 and 1.712 GHz
tricolour - 2019-07-03 10:29:03,407 INFO - The following strategies will be applied:
tricolour - 2019-07-03 10:29:03,407 INFO - 0: flag_nans_zeros (nan_dropouts_flag)
tricolour - 2019-07-03 10:29:03,407 INFO - 1: apply_static_mask (background_static_mask)
tricolour - 2019-07-03 10:29:03,407 INFO -      accumulation_mode: or
tricolour - 2019-07-03 10:29:03,407 INFO -      uvrange: 
tricolour - 2019-07-03 10:29:03,407 INFO - 2: sum_threshold (background_flags)
tricolour - 2019-07-03 10:29:03,407 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,407 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,407 INFO -      windows_freq: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,407 INFO -      outlier_nsigma: 5
tricolour - 2019-07-03 10:29:03,407 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,407 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,407 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,407 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,407 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,408 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,408 INFO -      spike_width_time: 12.5
tricolour - 2019-07-03 10:29:03,408 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,408 INFO -      num_major_iterations: 5
tricolour - 2019-07-03 10:29:03,408 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,408 INFO -      spike_width_freq: 10.0
tricolour - 2019-07-03 10:29:03,408 INFO - 3: uvcontsub_flagger (residual_flag_initial)
tricolour - 2019-07-03 10:29:03,408 INFO -      taylor_degrees: 10
tricolour - 2019-07-03 10:29:03,408 INFO -      sigma: 7.0
tricolour - 2019-07-03 10:29:03,408 INFO -      or_original_from_cycle: 1
tricolour - 2019-07-03 10:29:03,408 INFO -      major_cycles: 7
tricolour - 2019-07-03 10:29:03,408 INFO - 4: flag_nans_zeros (nan_dropouts_reflag)
tricolour - 2019-07-03 10:29:03,408 INFO - 5: apply_static_mask (uvrange_static_mask)
tricolour - 2019-07-03 10:29:03,408 INFO -      accumulation_mode: or
tricolour - 2019-07-03 10:29:03,408 INFO -      uvrange: 0~400
tricolour - 2019-07-03 10:29:03,408 INFO - 6: sum_threshold (final_st_very_broad)
tricolour - 2019-07-03 10:29:03,409 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,409 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,409 INFO -      windows_freq: [32, 48, 64, 128]
tricolour - 2019-07-03 10:29:03,409 INFO -      outlier_nsigma: 10
tricolour - 2019-07-03 10:29:03,409 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,409 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,409 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,409 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,409 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,409 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,409 INFO -      spike_width_time: 6.5
tricolour - 2019-07-03 10:29:03,409 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,409 INFO -      num_major_iterations: 2
tricolour - 2019-07-03 10:29:03,409 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,409 INFO -      spike_width_freq: 64.0
tricolour - 2019-07-03 10:29:03,409 INFO - 7: sum_threshold (final_st_broad)
tricolour - 2019-07-03 10:29:03,410 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,410 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,410 INFO -      windows_freq: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,410 INFO -      outlier_nsigma: 5
tricolour - 2019-07-03 10:29:03,410 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,410 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,410 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,410 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,410 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,410 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,410 INFO -      spike_width_time: 6.5
tricolour - 2019-07-03 10:29:03,410 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,410 INFO -      num_major_iterations: 2
tricolour - 2019-07-03 10:29:03,410 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,410 INFO -      spike_width_freq: 10.0
tricolour - 2019-07-03 10:29:03,410 INFO - 8: sum_threshold (final_st_narrow)
tricolour - 2019-07-03 10:29:03,410 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,411 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,411 INFO -      windows_freq: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,411 INFO -      outlier_nsigma: 8
tricolour - 2019-07-03 10:29:03,411 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,411 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,411 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,411 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,411 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,411 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,411 INFO -      spike_width_time: 2
tricolour - 2019-07-03 10:29:03,411 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,411 INFO -      num_major_iterations: 2
tricolour - 2019-07-03 10:29:03,411 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,411 INFO -      spike_width_freq: 10.0
tricolour - 2019-07-03 10:29:03,411 INFO - 9: uvcontsub_flagger (residual_flag_final)
tricolour - 2019-07-03 10:29:03,411 INFO -      taylor_degrees: 15
tricolour - 2019-07-03 10:29:03,411 INFO -      sigma: 7.0
tricolour - 2019-07-03 10:29:03,412 INFO -      or_original_from_cycle: 0
tricolour - 2019-07-03 10:29:03,412 INFO -      major_cycles: 7
tricolour - 2019-07-03 10:29:03,412 INFO - 10: flag_autos (flag_autos)
tricolour - 2019-07-03 10:29:03,412 INFO - 11: combine_with_input_flags (combine_with_input_flags)
tricolour - 2019-07-03 10:29:03,412 INFO - Only considering scans '94.0,95.0' as per user selection criterion
tricolour - 2019-07-03 10:29:03,412 INFO - Flagging based on quadrature polarized power
tricolour - 2019-07-03 10:29:03,586 INFO - Adding field '3C286' scan 94 to compute graph for processing
tricolour - 2019-07-03 10:29:03,712 INFO - Adding field 'PKS1934-63' scan 95 to compute graph for processing
Fatal Python error: Cannot recover from stack overflow.

Thread 0x00007feae37fe700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/concurrent/futures/thread.py", line 64 in _worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feae3fff700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 429 in _handle_results
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb00ff9700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 376 in _handle_tasks
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb017fa700 (most recent call first):
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 367 in _handle_workers
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb01ffb700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb027fc700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb02ffd700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb037fe700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb03fff700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb20ff9700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb217fa700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb21ffb700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb227fc700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb22ffd700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb237fe700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb23fff700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb40ff9700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007feb417fa700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
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Thread 0x00007feb637fe700 (most recent call first):
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Thread 0x00007feb63fff700 (most recent call first):
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Thread 0x00007feb80ff9700 (most recent call first):
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Thread 0x00007feb817fa700 (most recent call first):
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Thread 0x00007feb81ffb700 (most recent call first):
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Thread 0x00007feb82ffd700 (most recent call first):
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Thread 0x00007feb837fe700 (most recent call first):
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Thread 0x00007feb83fff700 (most recent call first):
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Thread 0x00007feba0ff9700 (most recent call first):
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Thread 0x00007feba17fa700 (most recent call first):
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Thread 0x00007feba1ffb700 (most recent call first):
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Thread 0x00007feba27fc700 (most recent call first):
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Thread 0x00007feba2ffd700 (most recent call first):
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Thread 0x00007feba37fe700 (most recent call first):
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Thread 0x00007feba3fff700 (most recent call first):
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Thread 0x00007febc0ff9700 (most recent call first):
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Thread 0x00007febc17fa700 (most recent call first):
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Thread 0x00007febc1ffb700 (most recent call first):
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Thread 0x00007febc2ffd700 (most recent call first):
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Thread 0x00007febe0ff9700 (most recent call first):
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Thread 0x00007fec03fff700 (most recent call first):
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Thread 0x00007fec20ff9700 (most recent call first):
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Thread 0x00007fec217fa700 (most recent call first):
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  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec21ffb700 (most recent call first):
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  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec227fc700 (most recent call first):
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  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec22ffd700 (most recent call first):
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  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec237fe700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec23fff700 (most recent call first):
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  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec44ff9700 (most recent call first):
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  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec457fa700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec45ffb700 (most recent call first):
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  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec467fc700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/multiprocessing/pool.py", line 108 in worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec46ffd700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/concurrent/futures/thread.py", line 64 in _worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec477fe700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/concurrent/futures/thread.py", line 64 in _worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec47fff700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/concurrent/futures/thread.py", line 64 in _worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec4d0e0700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/concurrent/futures/thread.py", line 64 in _worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Thread 0x00007fec4d8e1700 (most recent call first):
  File "/usr/lib/python3.5/threading.py", line 293 in wait
  File "/usr/lib/python3.5/queue.py", line 164 in get
  File "/usr/lib/python3.5/concurrent/futures/thread.py", line 64 in _worker
  File "/usr/lib/python3.5/threading.py", line 862 in run
  File "/usr/lib/python3.5/threading.py", line 914 in _bootstrap_inner
  File "/usr/lib/python3.5/threading.py", line 882 in _bootstrap

Current thread 0x00007fed04241700 (most recent call first):
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1013 in __dask_tokenize__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/base.py", line 707 in normalize_object
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 486 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/base.py", line 661 in tokenize
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 507 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 566 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 1952 in map_blocks
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/core.py", line 2113 in copy
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/utils.py", line 854 in __call__
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/utils.py", line 122 in compute_meta
  File "/scratch/bhugo/tricolour_testing/venv/lib/python3.5/site-packages/dask/array/blockwise.py", line 233 in blockwise
  ...
[1]    164814 abort (core dumped)  tricolour -fs polarisation -sn 94~95 1519747221.subset.ms
hugo@stevie /scratch/bhugo/tricolour_testing                                                                                                                                                                                                                     [10:28:29] 
(venv) > $ tricolour -fs polarisation -sn 94~95 1519747221.subset.ms                                                                                                                                                                                                       
tricolour - 2019-07-03 10:29:03,386 INFO - 
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     ▐░▌     ▐░░░░░░░░░░░▌     ▐░▌     ▐░▌          ▐░▌       ▐░▌▐░▌          ▐░▌       ▐░▌▐░▌       ▐░▌▐░░░░░░░░░░░▌
     ▐░▌     ▐░█▀▀▀▀█░█▀▀      ▐░▌     ▐░▌          ▐░▌       ▐░▌▐░▌          ▐░▌       ▐░▌▐░▌       ▐░▌▐░█▀▀▀▀█░█▀▀
     ▐░▌     ▐░▌     ▐░▌       ▐░▌     ▐░▌          ▐░▌       ▐░▌▐░▌          ▐░▌       ▐░▌▐░▌       ▐░▌▐░▌     ▐░▌
     ▐░▌     ▐░▌      ▐░▌  ▄▄▄▄█░█▄▄▄▄ ▐░█▄▄▄▄▄▄▄▄▄ ▐░█▄▄▄▄▄▄▄█░▌▐░█▄▄▄▄▄▄▄▄▄ ▐░█▄▄▄▄▄▄▄█░▌▐░█▄▄▄▄▄▄▄█░▌▐░▌      ▐░▌
     ▐░▌     ▐░▌       ▐░▌▐░░░░░░░░░░░▌▐░░░░░░░░░░░▌▐░░░░░░░░░░░▌▐░░░░░░░░░░░▌▐░░░░░░░░░░░▌▐░░░░░░░░░░░▌▐░▌       ▐░▌
      ▀       ▀         ▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀▀▀▀▀▀▀▀▀▀▀  ▀         ▀

Viva la révolution!

SARAO END USER LICENSE AGREEMENT

A DASK distributed RFI flagger by Science Data Processing and Radio Astronomy Research Group
Copyright 2019 South African Radio Astronomy Observatory (SARAO, SKA-SA). All rights reserved

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED GRATIS, "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF 
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE 
FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH 
THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. NO PORTION OF THIS SOFTWARE MAY BE REVERSE ENGINEERED OR INCLUDED IN OTHER 
PRODUCTS WITHOUT PRIOR WRITTEN PERMISSION FROM SARAO. THIS SOFTWARE, EITHER IN PORTION OR IN ITS ENTIRETY, MAY NOT BE SOLD OR OTHERWISE 
COMMERCIALLY EXPLOITED BY ANY THIRD PARTY

By using this software you, the end user, agree to these terms and conditions
***********************************************************************************************************************************************

tricolour - 2019-07-03 10:29:03,404 INFO - Flagging on the DATA column
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Looking for static masks...
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Searching /etc/tricolour
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Searching /scratch/bhugo/tricolour_testing/venv/etc/tricolour
tricolour.mask - 2019-07-03 10:29:03,404 INFO - Searching /home/hugo/.config/tricolour
tricolour.mask - 2019-07-03 10:29:03,405 INFO - Searching /home/hugo/.tricolour
tricolour.mask - 2019-07-03 10:29:03,405 INFO - Searching /scratch/bhugo/tricolour_testing/tricolour/tricolour/data
tricolour.mask - 2019-07-03 10:29:03,405 INFO - Found static mask file /scratch/bhugo/tricolour_testing/tricolour/tricolour/data/4k_lband_meerkat.staticmask
tricolour.mask - 2019-07-03 10:29:03,406 INFO - Loaded mask /scratch/bhugo/tricolour_testing/tricolour/tricolour/data/4k_lband_meerkat.staticmask (non-dilated) with 41.50% flagged bandwidth between 0.856 and 1.712 GHz
tricolour - 2019-07-03 10:29:03,407 INFO - The following strategies will be applied:
tricolour - 2019-07-03 10:29:03,407 INFO - 0: flag_nans_zeros (nan_dropouts_flag)
tricolour - 2019-07-03 10:29:03,407 INFO - 1: apply_static_mask (background_static_mask)
tricolour - 2019-07-03 10:29:03,407 INFO -      accumulation_mode: or
tricolour - 2019-07-03 10:29:03,407 INFO -      uvrange: 
tricolour - 2019-07-03 10:29:03,407 INFO - 2: sum_threshold (background_flags)
tricolour - 2019-07-03 10:29:03,407 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,407 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,407 INFO -      windows_freq: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,407 INFO -      outlier_nsigma: 5
tricolour - 2019-07-03 10:29:03,407 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,407 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,407 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,407 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,407 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,408 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,408 INFO -      spike_width_time: 12.5
tricolour - 2019-07-03 10:29:03,408 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,408 INFO -      num_major_iterations: 5
tricolour - 2019-07-03 10:29:03,408 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,408 INFO -      spike_width_freq: 10.0
tricolour - 2019-07-03 10:29:03,408 INFO - 3: uvcontsub_flagger (residual_flag_initial)
tricolour - 2019-07-03 10:29:03,408 INFO -      taylor_degrees: 10
tricolour - 2019-07-03 10:29:03,408 INFO -      sigma: 7.0
tricolour - 2019-07-03 10:29:03,408 INFO -      or_original_from_cycle: 1
tricolour - 2019-07-03 10:29:03,408 INFO -      major_cycles: 7
tricolour - 2019-07-03 10:29:03,408 INFO - 4: flag_nans_zeros (nan_dropouts_reflag)
tricolour - 2019-07-03 10:29:03,408 INFO - 5: apply_static_mask (uvrange_static_mask)
tricolour - 2019-07-03 10:29:03,408 INFO -      accumulation_mode: or
tricolour - 2019-07-03 10:29:03,408 INFO -      uvrange: 0~400
tricolour - 2019-07-03 10:29:03,408 INFO - 6: sum_threshold (final_st_very_broad)
tricolour - 2019-07-03 10:29:03,409 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,409 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,409 INFO -      windows_freq: [32, 48, 64, 128]
tricolour - 2019-07-03 10:29:03,409 INFO -      outlier_nsigma: 10
tricolour - 2019-07-03 10:29:03,409 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,409 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,409 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,409 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,409 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,409 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,409 INFO -      spike_width_time: 6.5
tricolour - 2019-07-03 10:29:03,409 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,409 INFO -      num_major_iterations: 2
tricolour - 2019-07-03 10:29:03,409 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,409 INFO -      spike_width_freq: 64.0
tricolour - 2019-07-03 10:29:03,409 INFO - 7: sum_threshold (final_st_broad)
tricolour - 2019-07-03 10:29:03,410 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,410 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,410 INFO -      windows_freq: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,410 INFO -      outlier_nsigma: 5
tricolour - 2019-07-03 10:29:03,410 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,410 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,410 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,410 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,410 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,410 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,410 INFO -      spike_width_time: 6.5
tricolour - 2019-07-03 10:29:03,410 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,410 INFO -      num_major_iterations: 2
tricolour - 2019-07-03 10:29:03,410 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,410 INFO -      spike_width_freq: 10.0
tricolour - 2019-07-03 10:29:03,410 INFO - 8: sum_threshold (final_st_narrow)
tricolour - 2019-07-03 10:29:03,410 INFO -      freq_extend: 3
tricolour - 2019-07-03 10:29:03,411 INFO -      windows_time: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,411 INFO -      windows_freq: [1, 2, 4, 8]
tricolour - 2019-07-03 10:29:03,411 INFO -      outlier_nsigma: 8
tricolour - 2019-07-03 10:29:03,411 INFO -      background_reject: 2.0
tricolour - 2019-07-03 10:29:03,411 INFO -      freq_chunks: 10
tricolour - 2019-07-03 10:29:03,411 INFO -      rho: 1.3
tricolour - 2019-07-03 10:29:03,411 INFO -      background_iterations: 5
tricolour - 2019-07-03 10:29:03,411 INFO -      flag_all_time_frac: 0.6
tricolour - 2019-07-03 10:29:03,411 INFO -      flag_all_freq_frac: 0.8
tricolour - 2019-07-03 10:29:03,411 INFO -      spike_width_time: 2
tricolour - 2019-07-03 10:29:03,411 INFO -      average_freq: 1
tricolour - 2019-07-03 10:29:03,411 INFO -      num_major_iterations: 2
tricolour - 2019-07-03 10:29:03,411 INFO -      time_extend: 3
tricolour - 2019-07-03 10:29:03,411 INFO -      spike_width_freq: 10.0
tricolour - 2019-07-03 10:29:03,411 INFO - 9: uvcontsub_flagger (residual_flag_final)
tricolour - 2019-07-03 10:29:03,411 INFO -      taylor_degrees: 15
tricolour - 2019-07-03 10:29:03,411 INFO -      sigma: 7.0
tricolour - 2019-07-03 10:29:03,412 INFO -      or_original_from_cycle: 0
tricolour - 2019-07-03 10:29:03,412 INFO -      major_cycles: 7
tricolour - 2019-07-03 10:29:03,412 INFO - 10: flag_autos (flag_autos)
tricolour - 2019-07-03 10:29:03,412 INFO - 11: combine_with_input_flags (combine_with_input_flags)
tricolour - 2019-07-03 10:29:03,412 INFO - Only considering scans '94.0,95.0' as per user selection criterion
tricolour - 2019-07-03 10:29:03,412 INFO - Flagging based on quadrature polarized power
tricolour - 2019-07-03 10:29:03,586 INFO - Adding field '3C286' scan 94 to compute graph for processing
tricolour - 2019-07-03 10:29:03,712 INFO - Adding field 'PKS1934-63' scan 95 to compute graph for processing
Fatal Python error: Cannot recover from stack overflow.

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  ...
[1]    164814 abort (core dumped)  tricolour -fs polarisation -sn 94~95 1519747221.subset.ms
bennahugo commented 5 years ago

In the future lets not merge until we're sure it runs on actual data.

bennahugo commented 5 years ago

@IanHeywood @o-smirnov please note to go from the qualified release tag 0.1.1 when you use this in production.

bennahugo commented 5 years ago

@sjperkins lets use the data set above as a qualification testing dataset and compare against the previous best chi^2. its a 4 antenna dataset

sjperkins commented 5 years ago

Why run master in production?

Anyway, this is an issue with dask and python3.5.

bennahugo commented 5 years ago

Could we make dask 1.2.0 an <= requirement in this case?

bennahugo commented 5 years ago

or python version >=3.6 in the setup.py

sjperkins commented 5 years ago

Regrettably, since this a private repo, we can't use travis to run tests https://github.com/ska-sa/tricolour/pull/27. I wonder if we could use the SDP jenkins...

sjperkins commented 5 years ago

Closing since there aren't any qualification tests anyway

bennahugo commented 5 years ago

We need to change the dask version. 3.5 is the last version of python on 16.04 systems

bennahugo commented 5 years ago

We can put the qualification test on a git lfs and run it manually?

sjperkins commented 5 years ago

Closed by #34