search

raw-lab / MetaCerberus

Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
BSD 3-Clause "New" or "Revised" License
48 stars 7 forks source link

Error installing from mamba #1

Closed elizabethmcd closed 1 year ago

elizabethmcd commented 1 year ago

Using the command given in the README: 

mamba create -n metacerberus -c bioconda -c conda-forge metacerberus

I get the error: 

Encountered problems while solving:
  - nothing provides gcc needed by metacerberus-0.1-pyh5e36f6f_0

I'm using mamba v0.15.3

raw-lab commented 1 year ago

Thank you for using MetaCerberus. Can you provide which operating system (linux, mac, windows) you are using? It appears it cant find the gcc. Can you run this in your terminal? gcc --version

raw-lab commented 1 year ago

It appears you may not have a gcc compiler installed. If you on a linux/ubuntu system you would install it with -> sudo apt-get install gcc Then try to install again. If it doesnt work send us the version it installs for gcc.

raw-lab commented 1 year ago

Did the gcc work? Let us know if this resolved your issue? If not, we can re-open this.

Thank you for using MetaCerberus.

Let us know if you were unable to install? We are more than happy to help or do an interactive session. Also, to add we have tested it on mamba 0.27.0. Your mamba may need an update.

decrevi commented 1 year ago

Thank you for your feedback, I am curious if you are using a Mac? Also I have updated the dependencies in the Bioconda recipe file, this should help. It will take a couple of days for the update to go live.

Please let us know if you have any other problems.