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raw-lab / MetaCerberus

Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
BSD 3-Clause "New" or "Revised" License
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Error in Step-10 #11

Closed TJrogers86 closed 5 months ago

TJrogers86 commented 5 months ago

I got a strange error in step-10. Here is my line of code to run MetaCerberus:

source ray-slurm-metacerberus.sh
metacerberus.py --prodigal data/processed/final_MAGs/all_final_MAGs/fixed_names --hmm "KOFam_all, COG, VOG, PHROG, CAZy" --dir_out /projects/luo_lab/Rogers_SidersViralAnalysis_XXXX_20XX/data/processed/Metabolic_predictions/metacerberus_out/test

Here is the error: image

raw-lab commented 5 months ago

We believe there is something with the header that is causing hmmer to fail. Please send a mag that is failing for testing.

raw-lab commented 5 months ago

Dr. Rodgers can you send us a couple 100 lines of the mag in question? Also, what program you used to make the mag? We think its a header issue.

raw-lab commented 5 months ago

Seeing that it resolved I will close for now. Thank you for using MetaCerberus