databases

[wittney-m]

Is there a specific folder that the databases should be placed in?

[raw937]

Thank you for using MetaCerberus! It depends how you installed MetaCerberus. But, if you used the mamba approach which we recommend the databases are automatically installed. Also, manual install they are also automatically installed.

By default they would be in lib/python3.9/site-packages/meta_cerberus/DB/ (mamba approach).

Do you have an error that it can't find the databases?

many thanks, RAWIII

[wittney-m]

Hi,

I downloaded everything manually.

This is the error I am receiving.

HMM: 'KOFam_all' ERROR: Cannot use 'KOFam_all', please download it using 'metacerberus.py --setup ERROR: No HMM DB Loaded

[raw937]

In order to better help. Can you send me the commands you used to install? You can go to your terminal and type -> history If you need to.

The databases are manually installed if you have conda and/or mamba installed.

many thanks, RAWIII

[wittney-m]

I downloaded the package on my machine directly from github because I was unable to use mamba or conda.

[raw937]

You need to have either mamba or conda installed. The set-up requires it even for manual install. What were your error messages from mamba or conda? https://conda.io/projects/conda/en/latest/user-guide/install/index.html

After conda is installed. In your terminal - conda install mamba

Once mamba is install then follow the mamba install guidelines.

Let me know if you get stuck? conda can hang sometimes.

many thanks, RAWIII

[raw937]

Let us know if you have trouble after installing mamba or conda? If you are still having issues please re-open this issue. I am going to close this issue for now.

Thank you for using MetaCerberus!

many thanks, RAWIII