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raw-lab / MetaCerberus

Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
BSD 3-Clause "New" or "Revised" License
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COG product name falling off #9

Closed vancurens closed 7 months ago

vancurens commented 7 months ago

Version: 1.2.1 System details: Ubuntu 22

COG product names appear incomplete in the annotation summary file, for instance: <html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:x="urn:schemas-microsoft-com:office:excel" xmlns="http://www.w3.org/TR/REC-html40">

locus_tag | FOAM | KEGG | COG | CAZy | PHROG | VOG | Best hit | length_bp | e-value | score | EC_number | product -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- NZ_CP064936.1_10 |  | | COG4769 |   |   |   | COG:COG4769 | 347 | 1.30E-29 | 98.9 |   | ;

Output and genome input: COG_names_issue.zip

raw-lab commented 7 months ago

thank you for using MetaCerberus. We have fixed the bug related to the COG metadata. all you need to do is load/activate your metacerberus conda environment and re-run setup. This will fix everything.

conda activate metacerberus
metacerberus.py --setup

Thank you for using MetaCerberus!