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raw-lab / mercat2

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
https://github.com/raw-lab/mercat2/
BSD 3-Clause "New" or "Revised" License
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How to find out the k-mers summary of protein fasta #6

Closed wevxman closed 8 months ago

wevxman commented 10 months ago

Hello! Mercat2 is a useful software to find out k-mers and I'm thankful for its help. I have a question that how to find out the k-mers summary of protein fasta after running Mercat2 using faa file. I just found a tsv file with a column title named 'count' and I couldn't understand the meaning of it. Hope your answer!

raw-lab commented 10 months ago

The count file provides you a list of kmers from the protein fasta with counts.

raw937 commented 10 months ago

Should look something like this: MTLL 101 MLLT 10

If it was a 4-mer you picked. Let us know?

raw-lab commented 8 months ago

Thank you for using MerCat2. We have a new update you should try. Let us know if any further issue arises? For now we are going to close this issue.

many thanks, RAW Lab