I am trying to run the analysis for Megakaryocyte & erythroid cells
But in our samples, the number for Megakaryocyte & erythroid cells is only 4.
There is a minimal requirement for number of cells in line 25
cell_remove_type = table_df$Var1[which(table_df$Freq < 5)]
I've changed that to
cell_remove_type = table_df$Var1[which(table_df$Freq < min_freq)]
and set the default value as 3 for now.
I am trying to run the analysis for Megakaryocyte & erythroid cells But in our samples, the number for Megakaryocyte & erythroid cells is only 4. There is a minimal requirement for number of cells in line 25
cell_remove_type = table_df$Var1[which(table_df$Freq < 5)]I've changed that to
cell_remove_type = table_df$Var1[which(table_df$Freq < min_freq)]and set the default value as 3 for now.