hiproc ends after HiCal and doesn't attempt HiStitch

[AndrewAnnex]

• hiproc version: 0.9.0 (current head)
• Python version: 3.8
• Operating System: ubuntu

Description

I updated Hiproc to v 0.9.0 recently and attempted to run 'PSP_002930_1800' through the pipeline hiproc -vv -j ./*.IMG.

but hiproc just seems to stop without issuing any warning or errors that I can see right after HiCal and does not attempt to run any later streps like HiStitch.

[rbeyer]

Hmmm, aha! The message that may not seem like an error that is, is this:

The image area has a LIS percent (71.098671875) greater than 40, so this image will not be processed through HiCal.

Firstly, I need to adjust that message so that it says what image it is, but more importantly, this is a UserWarning that gets kicked out by HiCal and not handled properly by hiproc (it should just cause that one problem image to not be processed, not seize up the whole process).

This should be an easy fix, but may take me a day or two, to get to it. The interim solution is to run the "pieces" of hiproc individually, or at least just the initial set: EDR_Stats, HiCal, HiStitch, HiccdStitch, HiColorInit, HiJitReg, and then HiSlither. The deal here is that the HiCal program itself deals with this error in a way that hiproc (which calls a module from within the HiCal module) doesn't. Then, from this point, you can run hiproc, and it'll start where HiSlither left off.

[rbeyer]

Bleh, no there are some other subtle down-stream problems if we're fundamentally missing a channel, so running things piecemeal may not work like I was hoping.

[rbeyer]

This is now fixed in hiproc 0.10.0 now available on PyPI and soon on conda.