rbturnbull / orthoflow

Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
https://rbturnbull.github.io/orthoflow/
Apache License 2.0
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IQtree -redo behaviour #58

Open hverbruggen opened 2 years ago

hverbruggen commented 2 years ago

Need to understand checkpointing behaviour of snakemake and IQtree to prevent issues from arising. Would be great to have IQtree checkpointing for users with huge datasets who might run out of walltime, but unsure how this would behave if inputs are updated. Would also be good to investigate if snakemake will play nice with IQtree checkpointing.