GillespieSSA2 0.2.4

[rcannood]

• MAJOR CHANGE: Split up Rcpp code to make separate parts easier to test.

• TESTING: Write unit tests for many of the functions.

• MINOR CHANGE: Renamed ssa_direct() to ssa_exact().

• MINOR CHANGE: Store firings, buffer and propensity objects only if requested.

• BUG FIX: limiting variable in ssa_btl() should be an integer, not a double.

• MINOR CHANGE: Timer now has millisecond accuracy, instead of second.

[codecov-io]

Codecov Report

:exclamation: No coverage uploaded for pull request base (master@0556b90). Click here to learn what that means. The diff coverage is 98.98%.

@@            Coverage Diff            @@
##             master       #3   +/-   ##
=========================================
  Coverage          ?   98.14%           
=========================================
  Files             ?       19           
  Lines             ?      701           
  Branches          ?        0           
=========================================
  Hits              ?      688           
  Misses            ?       13           
  Partials          ?        0

Impacted Files	Coverage Δ
R/package.R	100% <ø> (ø)
src/ssa_method.cpp	33.33% <0%> (ø)
src/test_helper_funs.cpp	100% <100%> (ø)
src/ssa_btl.cpp	82.85% <100%> (ø)
src/ssa_etl.cpp	100% <100%> (ø)
src/ssa_exact.cpp	100% <100%> (ø)
R/ssa_exact.R	100% <100%> (ø)
R/reaction.R	100% <100%> (ø)
src/ssa_method.h	100% <100%> (ø)
R/ssa_etl.R	100% <100%> (ø)
... and 9 more

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