Bioconductor submission

rcannood / SCORPIUS

Linear trajectory inference for single-cell RNA-seq

http://rcannood.github.io/SCORPIUS/

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Bioconductor submission #11

Open robertamezquita opened 5 years ago

robertamezquita commented 5 years ago

Hi, wonderful method (and the review article as well is superbly helpful!) - I was wondering if there might be plans to submit this package to Bioconductor and provide direct support for the SingleCellExperiment class as well. Thanks!

rcannood commented 5 years ago

Thanks for the suggestion! I'm currently looking into it, I'll keep you posted :)

rcannood commented 1 year ago

I think a good first step would be to add a documentation vignette for how to run SCORPIUS with a SingleCellExperiment. Would you be willing to create a format_sce.Rmd (similar to anndata.Rmd and Seurat.Rmd)?