search

rcannood / SCORPIUS

Linear trajectory inference for single-cell RNA-seq
http://rcannood.github.io/SCORPIUS/
58 stars 16 forks source link

vignette ‘seurat’ not found #43

Open JiahuaQu opened 5 months ago

JiahuaQu commented 5 months ago

After installation of SCORPIUS and Seurat, I ran the code vignette("seurat", package="SCORPIUS") in an attempt to read one of the vignettes containing more elaborate examples, but there wasn't any vignette. Hope to get the help. Thank you. > vignette("seurat", package="SCORPIUS") Warning message: vignette ‘seurat’ not found

> vignette("Seurat", package="SCORPIUS") Warning message: vignette ‘Seurat’ not found

Vignettes in package ‘SCORPIUS’: ginhoux Investigating dendritic cell maturation in dendritic cell progenitors (source, html) anndata Running SCORPIUS on a AnnData object (source, html) singlecellexperiment Running SCORPIUS on a SingleCellExperiment object (source, html) simulated-data Trajectory inference from simulated data (source, html)

PPDPQ commented 2 months ago

https://github.com/rcannood/SCORPIUS/blob/master/vignettes/seurat.Rmd Hi, I have the same question, and just found this. Hope it will help.