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rcastelo
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GSVA
Gene set variation analysis
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Most Data Being Filtered
#204
abadgerw
opened
7 hours ago
0
Missing Data
#203
abadgerw
opened
1 day ago
0
177 improve annotation mapping through readgmt
#202
axelklenk
closed
1 week ago
0
kcdf: in ssgseaParam,do we still need to set kcdf?
#201
Stefanhxw
closed
1 week ago
1
Store internal GSVA ranks to enable enrichment plots and flexible scoring
#200
rcastelo
opened
2 weeks ago
0
Some
#199
junglingfish
closed
3 weeks ago
0
Improve messages to the user in annotation mapping and in the GSVA method
#198
rcastelo
closed
4 weeks ago
0
Improve messages to the user
#197
rcastelo
closed
4 weeks ago
0
matrixStats error
#196
andreyurch
closed
1 month ago
1
New default auto argument to the kcdf parameter in the gsva method
#195
rcastelo
closed
1 month ago
0
add annotation mapping for SummarizedExperiment and subclasses
#194
axelklenk
closed
1 month ago
0
Add a new default 'auto' argument to the 'kcdf' parameter in the GSVA method
#193
rcastelo
closed
1 month ago
0
Support for GSEA plots
#192
cihanerkut
opened
1 month ago
6
Create a FAQ
#191
rcastelo
opened
1 month ago
0
189 perform ecdf estimation with gaussian kernels on sparse matrices
#190
rcastelo
closed
1 month ago
0
Perform ECDF estimation with Gaussian kernels on sparse matrices
#189
rcastelo
closed
1 month ago
0
How to rewrite? Is there a change in the way GSVA operates?
#188
lucienhan94
closed
1 month ago
1
How should ssGSEA be performed on GEP data?
#187
csu-lzj
closed
1 month ago
2
Can ssGSEA be performed when the number of genes in the reference gene set is very small?
#186
Chamberlain1993
closed
1 month ago
4
How to Set the 'zscore' Method in Recent Versions of GSVA Analysis?
#185
Li-mengjie
closed
1 month ago
2
GSVA.so: undefined symbol: match5
#184
bbimber
closed
1 month ago
5
fix docs and imports as necessary for the new version of readGMT()
#183
axelklenk
closed
1 month ago
0
177 improve annotation mapping through readgmt
#182
axelklenk
closed
2 months ago
0
144 running gsva without kernel density estimation on a dgcmatrix coerces to a dense matrix
#181
rcastelo
closed
2 months ago
0
Add function for spatial autocorrelation for SpatialExperiment object
#180
peremoles
closed
2 months ago
0
Calculate Moran's I on the rows of a spatialExperiment object
#179
rcastelo
closed
2 months ago
0
Problems encountered when calculating GSVA with large single-cell data
#178
sjasws
closed
1 month ago
7
Improve annotation mapping through readGMT()
#177
rcastelo
opened
2 months ago
0
Association between pathway score of two pathways
#176
Chrisdoan9
opened
3 months ago
2
First implementation of a missing data policy for ssGSEA
#175
rcastelo
closed
2 months ago
0
Implement a missing data policy for ssGSEA
#174
rcastelo
closed
2 months ago
0
Error: Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct; use a method-specific parameter object (see '?gsva').
#173
jiangych17
closed
3 months ago
1
Calling gsva is defunct, use a method-specific parameter object (error)
#172
LnOp16
closed
2 months ago
1
The data type of exprData matrix: for ssgseaParam, integer counts? Continuous expression data?
#171
jnhv
closed
4 months ago
2
gsva()function
#170
eliauk07yz
closed
4 months ago
2
change misleading warning messages
#169
axelklenk
closed
4 months ago
0
Result of gsva is all NA
#168
YihengJiang0912
closed
2 months ago
13
fix issue by updating argument name used in shiny app
#167
axelklenk
closed
4 months ago
0
res <- igsva() seem not work when use data from workspace
#166
DDL095
closed
4 months ago
2
Fail to compiling on HDF5
#165
yifanfu01
closed
3 months ago
1
Optimization in R code of .fastRndWalk()
#164
rcastelo
closed
5 months ago
0
158 load gmt files dealing duplicated gene sets
#163
axelklenk
closed
5 months ago
0
modify vignette to demonstrate use of 'geneSetSizes()' in limma example
#162
axelklenk
closed
5 months ago
0
fix WARNING Missing link or links in documentation object 'gsva.Rd': …
#161
axelklenk
closed
5 months ago
0
WARNING Missing link or links in documentation object 'gsva.Rd': ‘dgCMatrix’
#160
axelklenk
closed
5 months ago
0
157 provide filtered gene sets sizes
#159
axelklenk
closed
5 months ago
0
Load GMT files dealing duplicated gene sets
#158
rcastelo
closed
5 months ago
0
Provide filtered gene sets sizes
#157
rcastelo
closed
5 months ago
0
reconsider S4 class hierarchy
#156
axelklenk
opened
6 months ago
0
Type of output from gsva()
#155
Chrisdoan9
closed
6 months ago
7
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