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rcavalcante / annotatr

Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
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annotation name for enhancers #13

Closed divy-kangeyan closed 6 years ago

divy-kangeyan commented 6 years ago

Hi, The reference manual indicates that the package has enhancer annotations but I am not sure how to load them using the build_annotations function. i.e. I am not sure what to add as an argument for annotations in the following line in order to get the enhancer annotations annotatr::build_annotations(genome = 'hg38',annotations = ?)

rcavalcante commented 6 years ago

Hello,

After taking a look at the vignette I see what you mean. Thanks for pointing out some of the holes in the documentation.

The builtin_annotations() function will show you all the built-in annotations in the package. In particular, you're probably looking for hg38_enhancers_fantom.

I'll go ahead and close this.

divy-kangeyan commented 6 years ago

Yes, Thank you!