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rcedgar / muscle

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
https://drive5.com/muscle
GNU General Public License v3.0
188 stars 22 forks source link

error when running #23

Closed CaiWang0503 closed 2 years ago

CaiWang0503 commented 2 years ago

dyld: Symbol not found: ZNKSt7cxx1112basic_stringIcSt11char_traitsIcESaIcEE4findEPKcmm Referenced from: /Users/wang/src/BLCA/muscle Expected in: /usr/local/lib/libstdc++.6.dylib in /Users/wang/src/BLCA/muscle Abort trap: 6

anyone knows how fix it? thank you

rcedgar commented 2 years ago

which o/s? which version exactly, did you get the binary from release tag v5,1 or did you recompile?

CaiWang0503 commented 2 years ago

my mac is macos sierra 10.12.6, i download the muscle5.1.macos_intel64 and then give it execute permissions

rcedgar commented 2 years ago

If you recompile it should work. edit Actually I think it should also work if you install gcc-11, which you can do using brew install gcc.

Unfortunately, Apple make it very difficult to build a binary which will run under different MacOS releases, and it's also difficult for me to test on a range of different MacOS releases because accessing Macs in the cloud is clunky and expensive. If anyone has suggestions for improvements, I would be grateful. See the Wiki https://github.com/rcedgar/muscle/wiki for notes on how and why the Makefile is designed.

CaiWang0503 commented 2 years ago

thank you very much, i will try gcc-11 and recompile it, and go back here.

rcedgar commented 2 years ago

Please trying the installing gcc-11and check if this solves the problem with the muscle5.1.macos_intel64 binary in the release without recompiling, no doubt other people will have the same problem. Let me know if that is a fix, thanks!

CaiWang0503 commented 2 years ago

finally, i update the macos to 10.15, and then install gcc-11, and recompile it, it works