maxgapfract not working in Muscle 5.1.linux64 [12f0e2]

rcedgar / muscle

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

GNU General Public License v3.0

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maxgapfract not working in Muscle 5.1.linux64 [12f0e2] #26

Closed lukaszsobala closed 2 years ago

lukaszsobala commented 2 years ago

Hello,

just a quick issue - the maxgapfract option doesn't seem to work:

muscle5 -resample sequences.ensemble.efa -maxgapfract 0.3 -output sequences.ensemble.gap03.efa

the output:


Invalid command line
Unknown option maxgapfract

Am I doing something wrong?

Thanks, Lukasz

rcedgar commented 2 years ago

That's a bug in the help, the option should be max_gap_fract, sorry about that!

lukaszsobala commented 2 years ago

Thank you @rcedgar

nieder commented 1 year ago

Still present in 5.1.0