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rcedgar / muscle

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
https://drive5.com/muscle
GNU General Public License v3.0
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Unknown option addconfseqs #30

Closed KSteffen closed 2 years ago

KSteffen commented 2 years ago

Hej Robert! I'm running muscle5 on a computing cluster and all seems to work super smooth, but I've run into a small issue when trying to calculate the column confidence.

muscle -addconfseqs Gene_0107_diversified_ensemble.efa -output Gene_0107_diversified_ensemble_confseqs.efa

Below the output from the log file:

Invalid command line Unknown option addconfseqs

muscle 5.1.linux64 [] 131Gb RAM, 20 cores Built Mar 29 2022 15:27:13 (C) Copyright 2004-2021 Robert C. Edgar. https://drive5.com

Is this an issue at my end or yours? Cheers, Karin

rcedgar commented 2 years ago

My end, typo in the help, the command should be -addconfseq (no final S), sorry about that!