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rcedgar / muscle

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
https://drive5.com/muscle
GNU General Public License v3.0
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Fatal error UngappedSeq != m_UngappedSeqs[0] from efa_explode on resampled MSAs #38

Open rcedgar opened 2 years ago

rcedgar commented 2 years ago

This is a bug in the current code, I hope to post a fix in the next few days. Work-around is to write a script in python or similar -- it's pretty simple to read through the EFA file one line at a time. If the first character in the line is '<', start writing to a new file where the filename is the rest of this line (i.e. with '<' deleted).

TongZhou2017 commented 1 year ago

Same error while resampled sequence without gap