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rcedgar / muscle

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
https://drive5.com/muscle
GNU General Public License v3.0
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Multiple fasta files error #48

Closed navkahlon240 closed 1 year ago

navkahlon240 commented 1 year ago

Error: Command-line option "ABC.fasta" must start with '-'

I am trying to align multiple fasta files together in one output file, but it is giving me the error above.

rcedgar commented 1 year ago

this is not a valid command line. do something like cat inputs*.fasta > combined.fasta then align combined.fasta.