Closed navkahlon240 closed 1 year ago
this repo is v5, you're using v3. this set is too large for v3. at a guess v5 should be able to handle this set, though this is a large set and the sequence length is very variable, are you sure these are globally alignable?
What kind of data is globally alignable? How can we check whether data is globally alignable or not?
global alignment = all letters from all sequences are included in the order they appear in the sequence. if there are any of the following: transversions, inversions, or long duplications, insertions or deletion events between two sequences, then a global alignment will be somewhere between (a) align some sequence incorrectly and (b) totally wrong.
muscle -in combined.fasta -out align.fasta
MUSCLE v3.8.1551 by Robert C. Edgar
http://www.drive5.com/muscle This software is donated to the public domain. Please cite: Edgar, R.C. Nucleic Acids Res 32(5), 1792-97.
combined 74665 seqs, lengths min 38, max 11532, avg 307 Segmentation fault
Can you help me out with this?