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rcedgar / usearch12

Open-source usearch
https://drive5.com/usearch
GNU General Public License v3.0
79 stars 8 forks source link

QIIME integration #3

Open rcedgar opened 3 months ago

rcedgar commented 3 months ago

Volunteers solicited to tackle integration of usearch into QIIME. I'm guessing this will be straightforward by staring from the VSEARCH modules. If you'd like to take this on, please reply below.

telatin commented 3 months ago

Hi @rcedgar We'd like to give this a try 👋

telatin commented 3 months ago

usearch should be soon in Bioconda

new releases should trigger the bot to automatically get the updated version available to bioconda as well

rcedgar commented 3 months ago

awesome thanks! 🚀

magicprotoss commented 3 months ago

Hi, @rcedgar We’ve previously worked on a plug-in (q2-usearch) for usearch11, which wraps the zOTU and OTU picking pipeline. We’re excited to release the plug-in to the community once we finalize the tutorial documentation in a few days.

telatin commented 3 months ago

@thanhleviet made a first version here with tests https://github.com/quadram-institute-bioscience/q2-usearch

magicprotoss commented 3 months ago

We've finished preparing the first draft of the tutorial. We are planning to add more functions to the plug-in and to provide long term support for the community😊 https://github.com/magicprotoss/q2-usearch