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rcpch / digital-growth-charts-server

RCPCH's open source Digital Growth Chart API
https://growth.rcpch.ac.uk/
GNU Affero General Public License v3.0
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Merge established changes from Unstable into Alpha #129

Closed pacharanero closed 3 years ago

statist7 commented 3 years ago

Wow! - someone‘s been busy!

Sent from my iPhone

On 6 Feb 2021, at 12:58, Marcus Baw notifications@github.com wrote:



You can view, comment on, or merge this pull request online at:

https://github.com/rcpch/digital-growth-charts-server/pull/129

Commit Summary

File Changes

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pacharanero commented 3 years ago

It's about 3 months of development on the server, that was on Unstable but not yet pulled into Alpha! That was the cause of the weird issue on the growth.rcpch.ac.uk site. All fixed now!

On Sat, 6 Feb 2021 at 13:22, Tim Cole notifications@github.com wrote:

Wow! - someone‘s been busy!

Sent from my iPhone

On 6 Feb 2021, at 12:58, Marcus Baw notifications@github.com wrote:



You can view, comment on, or merge this pull request online at:

https://github.com/rcpch/digital-growth-charts-server/pull/129

Commit Summary

  • references broken up
  • add decimal ages to uk-who-preterm
  • refactored references into reference-specific files, function to select in sds_calculations.py
  • new uk_who_sds_calcuation function
  • refactor decimal ages added to references
  • functioning uk_who_sds_calculation
  • age indices removed
  • percentage median bmi works
  • refactor sds_calculation to uk_who.py. create global functions.
  • includes trisomy 21
  • add turner
  • pytest passed
  • update comments
  • bug fix
  • fix for flask chart data generation
  • Merge pull request #106 from rcpch/referencesrefactor
  • Refactor Measurement Class to accept multiple references
  • Merge pull request #108 from rcpch/eatyourpeas/issue107
  • Refactor Measurement Value
  • Merge pull request #111 from rcpch/eatyourpeas/issue109
  • intial refactor
  • measurement_from_sds needs to be agnostic of the reference it is applied to
  • Merge pull request #113 from rcpch/measurement_for_sds
  • Percentage median BMI now fixed
  • Merge pull request #115 from rcpch/eatyourpeas/issue114
  • create new controllers
  • create_chart function agnostic of reference implemented.
  • Merge pull request #116 from rcpch/eatyourpeas/issue41
  • experimental addition of pytest step in the GitHub Action
  • Merge commit 'a2360dd187f6294487fcbd09ff5adba47bb023d8' into unstable
  • experimental take 2 testing in the Action
  • deliberately broken Measurement class so that the tests will fail on GitHub Actions (testing the tests)
  • Reverted the deliberately broken Measurement class, now that test dploy of broken class proved that the GH deploy process fails if the tests fail.
  • Adds on-deploy tests to the alpha branch too
  • Changed reference names to lowercase. Miscellaneous linter formatting improvements.
  • validation included
  • validation refactor with blueprints
  • moves Plottable Child into the UK-WHO blueprint
  • disable some tests until I have time to implement them properly
  • some tidying
  • removes 'SingleCalculation' in favour of just 'Calculation'
  • functions chart data generation
  • create_chart fix
  • removed save chart data
  • Refactored the openAPI3 JSON and YAML generator out into a Blueprint. app.py is a calm and tidy place now
  • Merge branch 'unstable' of github.com:rcpch/digital-growth-charts-server into unstable
  • fix chart data return object
  • merge with open api
  • This is a fix for yesterday's refactor which accidentally messed up APIspec Autogeneration.
  • Merge branch 'unstable' of github.com:rcpch/digital-growth-charts-server into unstable
  • some further tweaks to the Docker setup
  • readme additions for Docker in development
  • updates to build docker scfipt
  • create all charts and tims centiles
  • create charts
  • redo charts
  • create uk-who charts at runtime
  • autogenerated charts for all references on load
  • label to age_type in plottablechild
  • plottable child changes
  • update
  • comment out growth chart data generation on deploy
  • update measurement class return corrected calendar age
  • add measurement_method to plottable child return object
  • update readme
  • tidy corrected age

File Changes

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