Open anajung opened 2 years ago
Hi Ana,
I think I've seen this one before but it has been a while. If it's not too much trouble can you upload the sequence you are trying to annotate and the version of vapid you are using?
Ryan
Hi Ryan,
Thank you for the prompt reply. I am using vapid3.py v1.6.7. Github does not seem to accept fasta format files so I am attaching it as a text file.
WUSTL_000226_A131.consensus.fa.txt
Ana
Okay I took a look at your sequence on my computer.
The command
python3 vapid3.py WUSTL_000226_A131.fasta example.sbt --r MW938189.1
Produces the error free and correctly annotated result I've attached. WUSTL_000226_A131.gbf.txt
The problem is almost certainly a missing dependency, and I'm pretty sure for you it's maafft. Please verify you are you able to run the example test files.
python3 vapid3.py example.fasta example.sbt
If you're sure you've got mafft correctly installed zip the entire output folder and send it to me.
Hi Ryan,
I ran the command below
python3 vapid3.py WUSTL_000226.consensus.fa template.sbt --spell_check --all
But it throws this Error:
It would be great to receive assistance on this, thanks! -Ana