Open sekhwal opened 1 year ago
Hi!
This is a problem running the python 2 version on python 3. Instead try python vapid3.py ...
Hopefully this works for you and happy annotating!
Ryan
I am trying python vapid3.py. Also, I generated the index files of my genome fasta file using makeblastdb. However, it still showing following error.
running command:
python /VAPiD-master/vapid3.py --db all_virus.fasta rndm_assembly.fasta template.sbt --metadata_loc metadata.csv
BLAST Database error: No alias or index file found for nucleotide database [all_virus.fasta] in search path [/Bcov_new/rndm-reads/vapid_run::]
Traceback (most recent call last):
File "/VAPiD-master/vapid3.py", line 968, in
Hi, I have downloaded VAPiD-master folder and running VAPID with the following command, it shows following error. Please help me to figure out the error.
run command: python /VAPiD-master/vapid.py --db all_virus.fasta rndm_assembly.fasta template.sbt error:
metadata not found in provided .csv or .csv not created - time for minimal manual entry for sequence - 1 Traceback (most recent call last): File "/VAPiD-master/vapid.py", line 958, in
metadata, coverage, full_name_list[x] = do_meta_data(virus_strain_list[x], True, full_name_list[x])
File "/home/mmk6053/Bcov_new/rndm-reads/vapid_run/VAPiD-master/vapid.py", line 863, in do_meta_data
col = ' [collection-date=' + raw_input('Enter collection date in the format (23-Mar-2005, Mar-2005, or 2005): ').strip() + ']'
NameError: name 'raw_input' is not defined