adjust() does not work properly

rcs333 / VAPiD

VAPiD: Viral Annotation and Identification Pipeline

MIT License

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adjust() does not work properly #5

Closed jey1401 closed 5 years ago

jey1401 commented 5 years ago

Minimally reproducible example:

>>> import vapid
>>> d = vapid.build_num_arrays("a--g-", "accgt")
>>> vapid.adjust(2, d[0], d[1], "accgt")
'-1'

rcs333 commented 5 years ago

This is actually intentional behavior, the second character is not an alignment match so we return -1 as an error code to let me know that the alignment isn't matching at that location.