rcsb mmtf issues - Githubissues

rcsb / mmtf

The specification of the MMTF format for biological structures

http://mmtf.rcsb.org/

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issues

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Magic number?

#50 timholy closed 5 months ago
3
why was mmtf dropped?

#49 pgbarletta closed 12 months ago
19
'RCSB restricted area' for some PDB IDs

#48 padix-key closed 3 years ago
4
Outdated atom names for some groups

#47 padix-key closed 3 years ago
4
Generating a super cell from the mmtf.

#46 jcminerlanl closed 3 years ago
1
Incomplete definition of the groupTypeList field

#45 cxn-pkovacs closed 4 years ago
2
5MOO has bonds between alt confs

#44 speleo3 closed 4 years ago
7
Chemical component identifier lost for unobserved non-standard residues

#43 josemduarte opened 5 years ago
2
Make a new release

#42 vitlav opened 5 years ago
7
[feature request] Please support the secondary structure information and other essential information supported by the pdb format

#41 yurivict closed 5 years ago
2
Only inter-group bonds in main bondAtomList field

#40 ppillot closed 5 years ago
0
Add 3NJW-onlyrequired.mmtf example

#39 speleo3 closed 5 years ago
3
chem_comp_type upper/lowercase?

#38 danpf closed 2 years ago
2
chainNameList, chainIdList are limited to 4 characters

#37 pwrose opened 6 years ago
3
Add extra fields

#36 danpf closed 6 years ago
5
Add aromaticity field + clear up some discrepancies

#35 danpf closed 6 years ago
10
Bond order and aromatics/resonance

#34 danpf closed 6 years ago
13
Clarify if bondAtomList and bondOrderList are optional for groups too

#33 gtauriello closed 6 years ago
5
Remark/comments field

#32 danpf closed 6 years ago
15
inconsistent reduced representation of 5ijo

#31 speleo3 closed 5 years ago
2
assembly subunit ordering

#30 speleo3 closed 6 years ago
4
multiple resolution/rFree/rWork values

#29 wojdyr closed 7 years ago
4
Equivalent to PDB HETATM records

#28 tomnewport closed 7 years ago
8
Make biological assemblies available

#27 tomnewport closed 7 years ago
3
add a test file without any optional fields

#26 speleo3 closed 5 years ago
0
Updating data in test-suite

#25 josemduarte closed 7 years ago
1
Inconsistency on whether sequenceIndexList is a required field

#24 gtauriello closed 7 years ago
1
typo: groupTypeId -> groupTypeList

#23 speleo3 closed 7 years ago
1
Adding a structure with ncs ops to test suite

#22 josemduarte closed 7 years ago
0
empty test files for edge case testing

#21 speleo3 closed 7 years ago
0
1R9V peptide bonds missing for DNM residue

#20 speleo3 closed 7 years ago
6
N-H1 and N-H3 bonds missing

#19 speleo3 opened 7 years ago
1
Dictionary encoding example ASP is incomplete

#18 pwrose closed 7 years ago
1
Update text that describes traversal pseudo code

#17 pwrose closed 7 years ago
1
Add info about atoms missing from a group

#16 arose opened 8 years ago
0
Bonds missing in NMR models after first

#15 BobHanson closed 8 years ago
2
Anisotropic b-factors, do we want them in mmtf?

#14 josemduarte opened 8 years ago
0
WIP Modify Spec.md

#13 abradle closed 8 years ago
1
Typos

#12 josemduarte closed 8 years ago
1
Recursive indexing section: typos correction

#11 valasatava closed 8 years ago
1
List vs Array

#10 pwrose closed 8 years ago
3
Split-list delta encoding is removed

#9 valasatava closed 8 years ago
1
Recursive indexing encoding description is added

#8 valasatava closed 8 years ago
1
faq.md update

#7 valasatava closed 8 years ago
0
Consider adding all operators needed to construct full unitcell

#6 arose closed 8 years ago
4
retinal missing double-bond connection to lysine in GPCR 1F88

#5 BobHanson closed 8 years ago
5
_struct_conn group missing

#4 BobHanson opened 8 years ago
4
DSSP needs upgrade to 2.0

#3 BobHanson opened 8 years ago
5
Add ncsOperatorList field

#2 arose closed 8 years ago
31
Add chemical component names to groupList entries?

#1 arose opened 8 years ago
5