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rcsb / mmtf-python

The python implementation of the MMTF API, decoder and encoder.
http://mmtf.rcsb.org/
Apache License 2.0
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UniProtIds #46

Closed dprada closed 5 years ago

dprada commented 5 years ago

Hi! Are the UniProtIds accessible with the Python API? Thanks in advance.

pwrose commented 5 years ago

UniProtIds are not accessible through the mmtf-python API. The official and up-to-date UniProt mappings are available from the EBI SIFTS project. The mmtf-pyspark project has an API to access UniProt mappings: h ttps://github.com/sbl-sdsc/mmtf-pyspark/blob/master/mmtfPyspark/datasets/pdbToUniProt.py

On Fri, Feb 22, 2019 at 9:17 AM Diego Prada-Gracia notifications@github.com wrote:

Hi! Are the UniProtIds accessible with the Python API? Thanks in advance.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/rcsb/mmtf-python/issues/46, or mute the thread https://github.com/notifications/unsubscribe-auth/ADuwEGIonrQYPRgixRmBN38F6PxIq2j4ks5vQCYmgaJpZM4bKCM1 .

-- Peter Rose, Ph.D. Director, Structural Bioinformatics Laboratory Lead, Bioinformatics and Biomedical Applications, Data Science Hub San Diego Supercomputer Center UC San Diego +1-858-822-5497

dprada commented 5 years ago

Thanks!