Closed sbliven closed 2 years ago
This looks like a consequence of the new PdbId class handling, introduced in https://github.com/biojava/biojava/pull/950
In principle the parser should not try to set a PDB id for AlphaFold case. But it looks like it is trying that. Do you know if you are parsing PDB format or mmCIF format?
I have errors on pdb structures as well ...
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On Tue, Jan 18, 2022 at 12:26 PM Jose Manuel Duarte < @.***> wrote:
This looks like a consequence of the new PdbId class handling, introduced in biojava/biojava#950 https://github.com/biojava/biojava/pull/950
In principle the parser should not try to set a PDB id for AlphaFold case. But it looks like it is trying that. Do you know if you are parsing PDB format or mmCIF format?
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@sbliven this is fixed in biojava 6.0.5
Thanks @josemduarte
Running CE-Symm on alphafold models give an error:
The error occurs in both PDB and CIF files