Fixing fasta output when input from file

[josemduarte]

See #116

[josemduarte]

Thanks @lafita

Question: would you know if the release process should be working? I tried:

mvn release:prepare
mvn release:perform

The second step fails to upload because of a connection timeout:

scp://cloudportal.open-bio.org/home/websites/biojava.org/html/static/download/maven/): Cannot connect. Reason: java.net.ConnectException: Connection timed out

I'm wondering why is that server used instead of oss sonatype like in biojava? The biojava setting is below:

<distributionManagement>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
    </distributionManagement>

Ping @sbliven

[lafita]

Apologies @josemduarte I missed your question about the release server. I am not sure why the server is different than biojava, @sbliven has managed the releases. Would it be an option to use BioJava's server in this repo?

[josemduarte]

Would it be an option to use BioJava's server in this repo?

Possibly. I can give it a try when I find some time.