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rcsb / symmetry

:ferris_wheel: Detect, analyze, and visualize protein symmetry
GNU Lesser General Public License v2.1
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Filter by name does not work on source.rcsb.org #32

Closed andreasprlic closed 8 years ago

andreasprlic commented 10 years ago

Filter by scop name does not work. This is the exception that I get

java.lang.NoSuchMethodException: org.biojava3.structure.align.symm.census2.SimpleResult.getName() at java.lang.Class.getMethod(Class.java:1665) at org.rcsb.fatcat.server.symmetry.CensusResultFilter.filterOrderIndependentParam(CensusResultFilter.java:182) at org.rcsb.fatcat.server.symmetry.CensusResultFilter.getSearchCondition(CensusResultFilter.java:148) at org.rcsb.fatcat.server.symmetry.CensusResultFilter.filter(CensusResultFilter.java:72) at org.apache.jsp.censusXMLData_jsp._jspService(censusXMLData_jsp.java:117) at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) at javax.servlet.http.HttpServlet.service(HttpServlet.java:728) at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:432) at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:390) at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:334) at javax.servlet.http.HttpServlet.service(HttpServlet.java:728) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1023) at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:312) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:744)

dmyersturnbull commented 10 years ago

Edit: Sorry, I was looking at the wrong code. Perhaps replace getName() with getScopId().

sbliven commented 10 years ago

Maybe just a mismatched jar version?

lafita commented 8 years ago

Should we close that?

lafita commented 8 years ago

If the issue was regarding the census table in source.rcsb.org, neither filter by SCOP name nor filter by SCOP superfamily work. It is not a problem with String comparison, because the option filter by SCOP description works as expected. Filter by Unit doesn't work neither.