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rcsb / symmetry

:ferris_wheel: Detect, analyze, and visualize protein symmetry
GNU Lesser General Public License v2.1
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Use MultipleAlignment DS as a symmetry return #57

Closed lafita closed 9 years ago

lafita commented 9 years ago

Optimization with gaps requires returning a MultipleAlignment to describe the symmetry. Because of that, all the post-analysis code has been adapted to deal with the new data structure.

New feature: in development, a recursive version of CeSymm that can identify multiple axis.

andreasprlic commented 9 years ago

travis has some failures, can you take a look?

lafita commented 9 years ago

Travis always fails for the symmetry project, it seems a downloading error (with biojava). @sbliven do you know the exact reason? We always install it locally to ensure that it compiles properly before doing a pull request. I tried with this one and everything is OK.

sbliven commented 9 years ago

Travis hasn't worked since Cole moved nexus behind the firewall. To fix it we need to remove the dependency on ava.

sbliven commented 9 years ago

See #30