Generated AOD.yaml file is missing the .nii extension for field anat_file

rdevon / cortex_old

Cortex - Deep learning tools for neuroimaging

GNU General Public License v3.0

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Generated AOD.yaml file is missing the .nii extension for field anat_file #5

Closed hirocode closed 8 years ago

hirocode commented 8 years ago

When running: python setup.py install --user

I entered 'Yes' to download the neuro-imaging data.

The AOD.yaml file that gets generated has the field: anat_file:[data dir]/ch2better_whitebg_aligned2EPI_V4 This causes an error when running the cortex-rbm-olin-demo.

I changed the field to include the .nii extension: anat_file:[data dir]/ch2better_whitebg_aligned2EPI_V4.nii

This fixed the problem.

rdevon commented 8 years ago

OK! Should be fixed now: https://github.com/rdevon/cortex/commit/bcd6a0bfc3775231ab7929e95af9ffa81cc9431e

Thanks!