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rdk / p2rank

P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
MIT License
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exception in phase 'semantic analysis' in source unit #75

Closed veronicagamo closed 1 month ago

veronicagamo commented 2 months ago

THis error appears ERROR: BUG! exception in phase 'semantic analysis' in source unit '/home/veronica/scipion/software/em/p2rank-2.3/config/default.groovy' Unsupported class file major version 65 00032: BUG! exception in phase 'semantic analysis' in source unit '/home/veronica/scipion/software/em/p2rank-2.3/config/default.groovy' Unsupported class file major version 65, when Protocol failed: Command ' /home/veronica/scipion/software/em/p2rank-2.3/prank predict "-f" "/home/veronica/ScipionUserData/projects/ROS1/Runs/000396_P2RankFindPockets/extra/3zbf.pdb" "-o" "/home/veronica/ScipionUserData/projects/ROS1/Runs/000396_P2RankFindPockets/extra" "-threads" "4"' returned non-zero exit status 1.

rdk commented 2 months ago

This looks like Java runtime version mismatch. P2Rank 2.3 you are using supports Java 8 to 15. The chance is that you have newer version of Java installed and the version of P2Rank is just too old. You can check which Java runtime is used by P2Rank by running echo $JAVA_HOME.

I'd recommend running the latest version of P2Rank https://github.com/rdk/p2rank/releases/tag/2.4.2 in any case because of many improvements and bug fixes incorporated since then.

rdk commented 1 month ago

Closing due to inactivity. @veronicagamo please let me know if the error persists.