wolfguidobolick
commented
3 years ago Hi Anthony,
OCEAN was written using python 2.7.. The error-messages you got are related to changes within RDKit since version 2015.03.1 and incompatibilities between Python 2.7 and 3.x. I'd recommend to use Python 2.7 and install the required packages as listed on the Readme.md of the OCEAN project.
I hope this helps!
Cheers,
Guido
Gesendet: Montag, 21. Juni 2021 um 17:14 Uhr Von: "Anthony Nash" @.> An: "rdkit/OCEAN" @.> Cc: "Subscribed" @.***> Betreff: [rdkit/OCEAN] Clarity on Python version for Ocean (#6)
Hi all,
I've just finished installing all dependencies and databases for OCEAN on a fresh and clean Ubuntu build. Please note, I've done all installation and postgresql inside a conda environment.
Unfortunately, when I execute python manage.py syncdb I get the error:
..... ModuleNotFoundError: No module named 'SimilarityMaps'
I fixed this by replacing the line import SimilarityMaps as SM in settings.py with:
from rdkit.Chem.Draw import SimilarityMaps as SM
I then ended up with a SyntaxError: invalid syntax for a line with an old print statement print "loaded {0}.....
Only based on my experience, this error is associated with old code written in Python2.* - yet I can't find on the git page what version of Python I should be using. Is the latest python ok to use, or redo everything in python2? Thanks.
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acnash
Hi all,
I've just finished installing all dependencies and databases for OCEAN on a fresh and clean Ubuntu build. Please note, I've done all installation and postgresql inside a conda environment.
Unfortunately, when I execute
python manage.py syncdbI get the error:I fixed this by replacing the line
import SimilarityMaps as SMin settings.py with:I then ended up with a SyntaxError: invalid syntax for a line with an old print statement
print "loaded {0}.....Only based on my experience, this error is associated with old code written in Python2.* - yet I can't find on the git page what version of Python I should be using. Is the latest python ok to use, or redo everything in python2?
Update I cleaned everything off the machine and started again but this time with Python2.7. Unfortunately, now I end up with the error: ImportError: No module named ocean.settings when I execute python manage.py synchdb