rdkit builds fail because of sourceforge.net downloads?

[markussitzmann]

Hi Greg,

I don't know but either something weird is going on or things from sourceforge.net are broken.

The Docker build of rdkit_containers/docker/centos7_base fails with this message:

Step 13/25 : RUN wget --quiet https://sourceforge.net/projects/boost/files/boost/1.63.0/boost_1_63_0.tar.bz2 && tar xjf boost_1_63_0.tar.bz2 ---> Running in f4896efda246 bzip2: (stdin) is not a bzip2 file. tar: Child returned status 2 tar: Error is not recoverable: exiting now The command '/bin/sh -c wget --quiet https://sourceforge.net/projects/boost/files/boost/1.63.0/boost_1_63_0.tar.bz2 && tar xjf boost_1_63_0.tar.bz2' returned a non-zero code: 2

The reason why I tried this, is: I wanted to attempt some basic and independent builds after this file https://github.com/spitzenidee/postgresql_rdkit/blob/master/Dockerfile failed with the following message (it worked for me nicely until recently):

== Using strict rotor definition Downloading http://sourceforge.net/projects/avalontoolkit/files/AvalonToolkit_1.2/AvalonToolkit_1.2.0.source.tar... CMake Error at Code/cmake/Modules/RDKitUtils.cmake:174 (MESSAGE): The md5 checksum for /opt/rdkit/External/AvalonTools/AvalonToolkit_1.2.0.source.tar is incorrect; expected: 092a94f421873f038aa67d4a6cc8cb54, found: cb530d737c8f2d1023797cf0587b4e05 Call Stack (most recent call first): External/AvalonTools/CMakeLists.txt:29 (downloadAndCheckMD5)

If I skip the AvalonTools, it works again (BTW, for what are the AvalonTools used?)

Thanks, Markus

[markussitzmann]

P.S. Sorry, I thought, I put this issue into the rdkit_containers issue tracker, where it actually belongs