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Conda build recipe for the rdkit
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psql error #80

Closed ValeryPolyakov closed 5 years ago

ValeryPolyakov commented 5 years ago

Description:

When attempting to start psql, including to execute: psql -c 'create extension rdkit' emolecules

I am getting the following error: psql: error while loading shared libraries: libncursesw.so.6: cannot open shared object file: No such file or directory

I am using: -UBUNTU 18.04 LTS installed as Windows Subsystem for Linux (WSL) -rdkit: 2019.03.3 -Python 3.6.5 |Anaconda, Inc.

Thanks for your help.

Valery

gdeol4 commented 5 years ago

Hi, did you figure out a fix for this? I'm having the same problem.

ValeryPolyakov commented 5 years ago

Somehow it was fixed. From what I understand, some newer RDkit components are incompatible with Postgres. They have to be downgraded. Do not know other details.

On Wed, Jul 31, 2019 at 5:38 AM Gurkamal Deol notifications@github.com wrote:

Hi, did you figure out a fix for this? I'm having the same problem.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/rdkit/rdkit/issues/2526?email_source=notifications&email_token=AKKXN7WFWUWAPWICQN6MIKDQCGBUDA5CNFSM4H5A4X4KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOD3HDJ2I#issuecomment-516830441, or mute the thread https://github.com/notifications/unsubscribe-auth/AKKXN7UVE3P4XWC3HP3IFATQCGBUDANCNFSM4H5A4X4A .

greglandrum commented 5 years ago

I don't believe that's the case. What Valery is likely talking about is this issue: https://github.com/rdkit/conda-rdkit/issues/78 where there was an incompatibility between the rdkit python and rdkit postgresql packages

This will (hopefully) be cleared up when we do the next patch release of the RDKit.

greglandrum commented 5 years ago

@gdeol4 : please try installing the ncurses package in conda and see if that helps.

gdeol4 commented 5 years ago

Thank you for the extremely quick replies! I figured out my problem, anaconda installed python 3.6.5 by default for some reason, once I upgrades to 3.6.8 it worked out. Forgive me for not having caught that earlier! Thanks again for the help.