rdkit / homebrew-rdkit

Homebrew formula for rdkit
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--with-java fails on OS X 10.9.5 #18

Closed rapodaca closed 5 years ago

rapodaca commented 9 years ago

Building with:

$ brew install rdkit

works fine. However, building with:

$ brew install rdkit --with-java

fails:

$ brew install rdkit --with-java
==> Installing rdkit from rdkit/homebrew-rdkit
==> Downloading https://github.com/rdkit/rdkit/archive/Release_2014_09_1.tar.gz
Already downloaded: /Library/Caches/Homebrew/rdkit-2014.09.1.tar.gz
==> mkdir External/java_lib
==> curl http://search.maven.org/remotecontent?filepath=junit/junit/4.11/junit-4.11.jar -o External/java_lib/junit.jar
==> cmake -DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/2014.09.1' -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_SWIG_WRAPPERS=ON -DRDK_BUILD_CPP_TESTS=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DPYTHON_EXECUTABLE='/usr/bin/python' -DPYTHON_INCLUDE_DIR='/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7' -DPYTHON_LIBRARY='/System/Library/Frameworks/Python.framework/Versions/2.7/Python' -DPYTHON_NUMPY_INCLUDE_PATH='/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include' .

-- Configuring incomplete, errors occurred!
See also "/tmp/rdkit-EQwcuu/rdkit-Release_2014_09_1/CMakeFiles/CMakeOutput.log".
See also "/tmp/rdkit-EQwcuu/rdkit-Release_2014_09_1/CMakeFiles/CMakeError.log".

READ THIS: http://git.io/brew-troubleshooting
If reporting this issue please do so at (not Homebrew/homebrew):
  https://github.com/rdkit/homebrew-rdkit/issues

Neither cited log file exists.

$ java -version
java version "1.6.0_65"
Java(TM) SE Runtime Environment (build 1.6.0_65-b14-462-11M4609)
Java HotSpot(TM) 64-Bit Server VM (build 20.65-b04-462, mixed mode)

Ideas?

UnixJunkie commented 5 years ago

this could be closed