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rdkit / shape-it

Updated version of Silicos-it's shape-based alignment tool
MIT License
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MakeFile issue for RDKit libraries #15

Open Mirrty opened 3 years ago

Mirrty commented 3 years ago

I am having some troubles compiling the package during 'make' :

anaconda3/envs/my-rdkit/lib/libRDKitGraphMol.so: undefined reference to `std::__cxx11::basic_istringstream<char, std::char_traits, std::allocator >::basic_istringstream()@GLIBCXX_3.4.26'

I was trying to add -D_GLIBCXX_USE_CXX11_ABI=0 in MakeFile, but it didn't help.

++

gcc (GCC) 8.3.1 20191121 (Red Hat 8.3.1-5) Linux Centos 8 rdkit 2021.03.5

TVect commented 2 years ago

I am having some troubles compiling the package during 'make' :

anaconda3/envs/my-rdkit/lib/libRDKitGraphMol.so: undefined reference to `std::__cxx11::basic_istringstream<char, std::char_traits, std::allocator >::basic_istringstream()@GLIBCXX_3.4.26'

I was trying to add -D_GLIBCXX_USE_CXX11_ABI=0 in MakeFile, but it didn't help.

++

gcc (GCC) 8.3.1 20191121 (Red Hat 8.3.1-5) Linux Centos 8 rdkit 2021.03.5

I had the same problem, do you know how to fix it? Thanks.