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rdocking
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fusebench
A workbench for aggregation and interpretation of RNA-Seq gene fusions
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Update README post-hackathon
#71
rdocking
opened
6 years ago
0
Annotation merging
#70
wilcas
closed
6 years ago
0
Merge observations
#69
rdocking
closed
6 years ago
0
39 cosmic to bedpe parser
#68
stefpiatek
closed
6 years ago
0
Document issues encountered in developing file converters
#67
rdocking
opened
6 years ago
2
Generate UpSet visualizations for set intersections
#66
rdocking
opened
6 years ago
1
Draft slide presentation for wrap-up
#65
rdocking
opened
6 years ago
0
bedpe files
#64
eacton
closed
6 years ago
1
Update paths
#63
rdocking
closed
6 years ago
0
Update Makefile to make and validate four parsers
#62
rdocking
closed
6 years ago
0
Update Makefile to include new tools
#61
rdocking
closed
6 years ago
1
Visualize intersection of observations for a given sample
#60
rdocking
closed
6 years ago
0
Visualize intersection of annotation data sources
#59
rdocking
closed
6 years ago
0
Create merged observation tool
#58
rdocking
opened
6 years ago
2
Create merged annotation source
#57
rdocking
closed
6 years ago
1
Tidying pass
#56
rdocking
closed
6 years ago
0
chimerseq updated and chimerpub made
#55
eacton
closed
6 years ago
0
Change directory structure for parsers
#54
rdocking
closed
6 years ago
0
chimerDB to bedpe paerser
#53
rdocking
closed
6 years ago
0
defuse and prada update
#52
eacton
closed
6 years ago
0
Defusetest
#51
rdocking
closed
6 years ago
0
Add summary statistics for BEDPE file script
#50
stefpiatek
closed
6 years ago
0
PAVfinder BEDPE output failing validation
#49
rdocking
closed
6 years ago
2
Add initial sketch for the pipeline runner
#48
rdocking
closed
6 years ago
1
chimerseq db as csv to bedpe
#47
eacton
closed
6 years ago
0
Finished PanCan to BEDPE converter.
#46
wilcas
closed
6 years ago
1
Validate bedpe
#45
hiraksarkar
closed
6 years ago
0
Set up workflow automation framework and add initial steps
#44
rdocking
closed
6 years ago
7
Run validator and format conversions on AML cell line data
#43
rdocking
closed
6 years ago
2
Test bedtools commands for merging existing annotation sources
#42
rdocking
closed
6 years ago
4
Convert ChimerDB ChimerSeq data to BEDPE
#41
rdocking
closed
6 years ago
1
Convert ChimerDB ChimerPUB to BEDPE format
#40
rdocking
closed
6 years ago
1
Convert COSMIC fusions to BEDPE format
#39
rdocking
closed
6 years ago
5
ericscript conversion
#38
hiraksarkar
closed
6 years ago
1
Convert ChimerDB DB to BEDPE format
#37
rdocking
closed
6 years ago
2
Convert CIViC data to BEDPE format
#36
rdocking
closed
6 years ago
2
prada to bedpe parser
#35
eacton
closed
6 years ago
0
Convert PanCan fusion data to BEDPE format
#34
rdocking
closed
6 years ago
3
Convert Star Fusion output format to BEDPE
#33
sameerd
closed
6 years ago
0
Document data source: ChiTARs
#32
rdocking
closed
6 years ago
4
Added infusion parser for txt files
#31
alexsweeten
closed
6 years ago
0
Document annotation source dbCRID
#30
rdocking
closed
6 years ago
2
Document annotation source: COSMIC
#29
rdocking
closed
6 years ago
3
Document annotation source: TICdb
#28
rdocking
closed
6 years ago
3
Fusionmap to bedpe
#27
wilcas
closed
6 years ago
0
Document annotation source: ChimerDB
#26
rdocking
closed
6 years ago
6
Document annotation sources: Quiver
#25
rdocking
closed
6 years ago
1
Finished soapfuse parser using same template I made for fusioncatcher
#24
wilcas
closed
6 years ago
0
defuse to bed parser
#23
eacton
closed
6 years ago
0
Create jaffa_parser.py
#22
alexsweeten
closed
6 years ago
0
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